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View Structure Prediction Details

Protein: CE39412
Organism: Caenorhabditis elegans
Length: 421 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39412.

Description E-value Query
Range
Subject
Range
gi|115932072, gi... - gi|115932072|ref|XP_001188803.1| PREDICTED: similar to Pigm protein [Strongylocentrotus purpuratus],...
364.0 [0..33] [395..13]

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Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDKKLQTN QEVEKEQENG SPFSDFWVPI SAAIAVRAVC ASYSDLFEER VELTSVVYSF  60
   61 EKLKDSIAMV DDGLNPFEAK NMHFPPLTLH LFRFLLNTAP TMILPLFISI DVATTWILSS 120
  121 AADVVWRQTH GSSSIRKLIF SLYAFNPITI VSTGILSLTV IQNFVSAVIL LSLVTDRPTI 180
  181 CAILIGAWSS FTIYPFILIS CLVFRSNGSI VKFLSLVLVS ALTTITFVGI NYLLN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [236-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQSLNFLGPV YASILNFSSI QPNSGLYWYF FVQIFEHFRS FYTMSFVVLY FFMPIPITFL  60
   61 IRKDTILHFT IIGFLVSIFF PYPTLNQVSL LLAFLPVHDV YKKHFRYTIL IAGTIVSTVF 120
  121 LMPVMWHMWI VSSSGNANFF FGTTIVYNVA LINLVMDMIF VYSRRQIDLE YSDALKKNTK 180
  181 MDFAFY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 36.657577
Match: PF06728.4
Description: No description for PF06728.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle