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View Structure Prediction Details

Protein: gi|115438228, gi...
Organism: Oryza sativa Japonica Group
Length: 122 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115438228, gi....

Description E-value Query
Range
Subject
Range
gi|102139975 - gi|102139975|gb|ABF70110.1| mitochondrial ATP synthase g subunit family protein [Musa balbisiana]
230.0 [0..1] [122..1]
gi|76160976 - gi|76160976|gb|ABA40451.1| unknown [Solanum tuberosum]
228.0 [0..1] [121..1]
gi|42573049, gi|... - pir||T06005 hypothetical protein T25K17.20 - Arabidopsis thaliana, gi|7269472|emb|CAB79476.1| putat...
225.0 [0..1] [121..1]
gi|48843828, gi|... - gi|50932457|ref|XP_475756.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|48843828|g...
222.0 [0..1] [122..4]
gi|116060129 - gi|116060129|emb|CAL56188.1| unnamed protein product [Ostreococcus tauri]
127.0 [0..27] [112..230]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRLAQLRS KAAQASELVS KHGCAYYKEV MEKNKQHVVQ PPTVEKCQEL SKQLFYTRLA  60
   61 SLPGRYEAFW KEFDGVKQVW KNRKELKVED LGIVTLFGVE LYAWFCVGEI VGRGFTITGY 120
  121 KV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 36.031517
Match: PF04718.6
Description: No description for PF04718.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.890 N/A N/A a.47.2 t-snare proteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle