YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17883-PB
Organism:	Drosophila melanogaster
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17883-PB.

Description	E-value	Query Range	Subject Range
gi\|109462889, gi... - gi\|62641309\|ref\|XP_344966.2\| PREDICTED: similar to TBC1 domain family, member 10b [Rattus norvegicus...	234.0	[0..5]	[279..296]
gi\|49119692 - gi\|49119692\|gb\|AAH72576.1\| Tbc1d10b protein [Mus musculus]	234.0	[0..5]	[279..156]
gi\|68534049 - gi\|68534049\|gb\|AAH98419.1\| TBC1D10B protein [Homo sapiens]	234.0	[0..5]	[279..173]
tbc-17 - status:Partially_confirmed UniProt:Q9U2D8 protein_id:CAB60374.3	233.0	[0..7]	[282..541]
gi\|114662033 - gi\|114662033\|ref\|XP_510925.2\| PREDICTED: TBC1 domain family, member 10B isoform 2 [Pan troglodytes]	233.0	[0..5]	[279..315]
gi\|187033147, gi... - gi\|39592380\|emb\|CAE63457.1\| Hypothetical protein CBG07920 [Caenorhabditis briggsae], gi\|187033147\|em... gi\|157753334 - gi\|157753334\|ref\|XP_001680379.1\| Hypothetical protein CBG07920 [Caenorhabditis briggsae AF16]	227.0	[0..12]	[282..220]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKNEQRPLN FEKCPESDDE LKKRLEIEKL INKNIDKNIS FDVLVKLSLA PYGLVNDDFR  60
   61 RILWPQLAGV DINHLGQAPT LDKFQCHPEY NQVVLDVNRS LKRFPPGIPY EQRIALQDQL 120
  121 TVLILRVIQK YPNLRYYQGY HDVAVTFLLV VGEEIAFAIM EQLSTTHFSE CMQETMEATQ 180
  181 RRLMFIWPII KFENPELYQF LQNSTVGTLF SLPWYLTWFG HSLTSYRTVV RLYDYFLASP 240
  241 IYTSIFVTAA ILLYRSDEIL KEDCDMASVH CLLSVVSYSL KY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	2qq8A
Description:	No description for 2qq8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits