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View Structure Prediction Details

Protein: RPA3676
Organism: Rhodopseudomonas palustris CGA009
Length: 174 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA3676.

Description E-value Query
Range
Subject
Range
gi|109701928, gi... - gi|76795128|ref|ZP_00777565.1| Prepilin peptidase [Pseudoalteromonas atlantica T6c], gi|76589596|gb|...
123.0 [0..5] [163..142]

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Predicted Domain #1
Region A:
Residues: [1-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIADLLRISL FPALMAFAAT SDLLTMTISN RISLLLVAGF LVLAPLTGLG AYDILLHFGA  60
   61 GALVLAVAFG CFAMGWIGGG DAKVVAAAAL WFGFDHLLDY LLYASLFGGA LTLLLLGFRQ 120
  121 WPLPYRLACQ GWVLRLHDQQ TGIPYGIALA MGALVIYPHT EWIKAVDIAR FTLS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.05
Match: 1p7bA
Description: Inward rectifier potassium channel Kirbac1.1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle