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View Structure Prediction Details

Protein: RPA3148
Organism: Rhodopseudomonas palustris CGA009
Length: 132 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA3148.

Description E-value Query
Range
Subject
Range
gi|86572543, gi|... - gi|86749515|ref|YP_486011.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas palus...
170.0 [0..1] [132..1]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQPSLSHSA AGQAGDRINR PLAMAGDGGR SGPSTPSTSV ITKTKPRTKR PNLYRVLILN  60
   61 DDYTPMEFVV HVLEKFFQMD VEAATKVMLH VHHHGIGECG VFTYEIAETK VTQVMDFARK 120
  121 HQHPLQCVME KK

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Detection Method: PSI-BLAST
Confidence: 36.045757
Match: 1mbuC
Description: Adaptor protein ClpS (YljA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 1.89742712196707 bayes_pls_golite062009
structural molecule activity 1.6136173890368 bayes_pls_golite062009
binding 1.36469694828004 bayes_pls_golite062009
protein binding 0.723174896490921 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle