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View Structure Prediction Details

Protein: RPA1393
Organism: Rhodopseudomonas palustris CGA009
Length: 268 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA1393.

Description E-value Query
Range
Subject
Range
gi|13471749, gi|... - gi|14022493|dbj|BAB49102.1| mll1820 [Mesorhizobium loti MAFF303099], gi|13471749|ref|NP_103316.1| hy...
223.0 [0..46] [267..9]

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Predicted Domain #1
Region A:
Residues: [1-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFAHSVARY RSKWSRHLSQ NGSEPLARNP IKRDISQWNW SSAEMTTADT NKPAEPPTER  60
   61 TRLKRYHWLA KYDQETINAI IDAGIVCQIG YVIDSQPYVT PTNHWRIDDY VYWHGSSASR 120
  121 MLKEQQRGIP VCFTVTHLDG IVFSRAAFNH NINFRSVMAF GHGELCDEEL KREALQVFVD 180
  181 RLAPGLWDYA RKPTDQEWKA SKVIRMKLDE VSAKVSDGLP DEEPEDLASN LWAGSIGLQL 240
  241 VQAPPVPDPK LRPGIDMPDF VKNFKYSR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 2furA
Description: Crystal structure of hypothetical protein 10640715 from Thermoplasma acidophilum at 1.80 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.130848055218245 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle