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View Structure Prediction Details

Protein: RPA0354
Organism: Rhodopseudomonas palustris CGA009
Length: 110 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA0354.

Description E-value Query
Range
Subject
Range
gi|20808237, gi|... - gi|20808237|ref|NP_623408.1| phosphotransferase system, HPr-related proteins [Thermoanaerobacter ten...
gi|20808237 - gi|20808237|ref|NP_623408.1| Phosphotransferase system, HPr-related proteins [Thermoanaerobacter ten...
121.0 [0..22] [109..1]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIDAPQPGS GPDQASGASG DKISREIPVT NKRGLHARAS AKFVQMAERF NAEVWVTRNG  60
   61 ETVGGTSIMG LMMLAAGIGT TVTVSASGPE ARQALDAITE LMGSKFGEEE 

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Detection Method: PSI-BLAST
Confidence: 25.0
Match: 1qr5A
Description: Histidine-containing phosphocarrier protein (HPr)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity 5.70778264466435 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 4.7398246519874 bayes_pls_golite062009
transporter activity 1.94557075462337 bayes_pls_golite062009
transmembrane transporter activity 1.8285077384404 bayes_pls_golite062009
active transmembrane transporter activity 1.73790085561506 bayes_pls_golite062009
substrate-specific transporter activity 1.57976971135135 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.4723961195197 bayes_pls_golite062009
catalytic activity 1.16445344378552 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.97685688328333 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.61783246115451 bayes_pls_golite062009
binding 0.569728786489819 bayes_pls_golite062009
transferase activity 0.08533057053308 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle