| Protein: | RFC1 |
| Organism: | Homo sapiens |
| Length: | 1148 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFC1.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..1139] | [1..1139] |
|
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0.0 | [1..1139] | [1..1139] |
|
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0.0 | [1..1139] | [1..1139] |
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0.0 | [1..1126] | [1..1108] |
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0.0 | [1..1120] | [1..1117] |
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Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MDIRKFFGVI PSGKKLVSET VKKNEKTKSD EETLKAKKGI KEIKVNSSRK EDDFKQKQPS 60
61 KKKRIIYDSD SESEETLQVK NAKKPPEKLP VSSKPGKISR QDPVTYISET DEEDDFMCKK 120
121 AASKSKENGR STNSHLGTSN MKKNEENTKT KNKPL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [156-301] |
1 11 21 31 41 51
| | | | | |
1 SPIKLTPTSV LDYFGTGSVQ RSNKKMVASK RKELSQNTDE SGLNDEAIAK QLQLDEDAEL 60
61 ERQLHEDEEF ARTLAMLDEE PKTKKARKDT EAGETFSSVQ ANLSKAEKHK YPHKVKTAQV 120
121 SDERKSYSPR KQSKYESSKE SQQHSK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [302-898] |
1 11 21 31 41 51
| | | | | |
1 SSADKIGEVS SPKASSKLAI MKRKEESSYK EIEPVASKRK ENAIKLKGET KTPKKTKSSP 60
61 AKKESVSPED SEKKRTNYQA YRSYLNREGP KALGSKEIPK GAENCLEGLI FVITGVLESI 120
121 ERDEAKSLIE RYGGKVTGNV SKKTNYLVMG RDSGQSKSDK AAALGTKIID EDGLLNLIRT 180
181 MPGKKSKYEI AVETEMKKES KLERTPQKNV QGKRKISPSK KESESKKSRP TSKRDSLAKT 240
241 IKKETDVFWK SLDFKEQVAE ETSGDSKARN LADDSSENKV ENLLWVDKYK PTSLKTIIGQ 300
301 QGDQSCANKL LRWLRNWQKS SSEDKKHAAK FGKFSGKDDG SSFKAALLSG PPGVGKTTTA 360
361 SLVCQELGYS YVELNASDTR SKSSLKAIVA ESLNNTSIKG FYSNGAASSV STKHALIMDE 420
421 VDGMAGNEDR GGIQELIGLI KHTKIPIICM CNDRNHPKIR SLVHYCFDLR FQRPRVEQIK 480
481 GAMMSIAFKE GLKIPPPAMN EIILGANQDI RQVLHNLSMW CARSKALTYD QAKADSHRAK 540
541 KDIKMGPFDV ARKVFAAGEE TAHMSLVDKS DLFFHDYSIA PLFVQENYIH VKPVAAG
|
| Detection Method: | |
| Confidence: | 56.30103 |
| Match: | 1oz4A |
| Description: | VCP/p97 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [899-927] |
1 11 21 31 41 51
| | | | | |
1 GDMKKHLMLL SRAADSICDG DLVDSQIRS
|
| Detection Method: | |
| Confidence: | 49.39794 |
| Match: | 1iqpA |
| Description: | Replication factor C |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [928-1148] |
1 11 21 31 41 51
| | | | | |
1 KQNWSLLPAQ AIYASVLPGE LMRGYMTQFP TFPSWLGKHS STGKHDRIVQ DLALHMSLRT 60
61 YSSKRTVNMD YLSLLRDALV QPLTSQGVDG VQDVVALMDT YYLMKEDFEN IMEISSWGGK 120
121 PSPFSKLDPK VKAAFTRAYN KEAHLTPYSL QAIKASRHST SPSLDSEYNE ELNEDDSQSD 180
181 EKDQDAIETD AMIKKKTKSS KPSKPEKDKE PRKGKGKSSK K
|
| Detection Method: | |
| Confidence: | 77.0 |
| Match: | 1sxjA |
| Description: | Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) |
Matching Structure (courtesy of the PDB): |
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