YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|94418441, gi\|...
Organism:	Mus musculus
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94418441, gi|....

Description	E-value	Query Range	Subject Range
gi\|94419652, gi\|... - gi\|94419652\|ref\|XP_996107.1\| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor) sub...	123.0	[0..1]	[99..1]
CG13994-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG13994 (CG13994, FBgn0031772). It is a prote... gi\|220957912, gi... - gi\|220957912\|gb\|ACL91499.1\| CG13994-PA [synthetic construct], gi\|220951008\|gb\|ACL88047.1\| CG13994-PA...	114.0	[0..1]	[92..38]
gi\|39589189, gi\|... - gi\|39589189\|emb\|CAE57922.1\| Hypothetical protein CBG00975 [Caenorhabditis briggsae], gi\|187038635\|em... gi\|157748913 - gi\|157748913\|ref\|XP_001678170.1\| Hypothetical protein CBG00975 [Caenorhabditis briggsae AF16]	106.0	[0..1]	[71..374]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKLEKGKS GNKVGWSSDT IDNEHLGRRS SKCCFVYEKQ RAFGESSSES EKEYEDNGDV  60
   61 LCAWGHQKGR HSDLSSNLVN TSSSKPQDPY KSLPVSIID

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.443697
Match:	PF07491.2
Description:	No description for PF07491.2 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits