YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51749573, gi\|...
Organism:	Mus musculus
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51749573, gi|....

Description	E-value	Query Range	Subject Range
gi\|13345187 - gi\|13345187\|gb\|AAK19244.1\|AF312916_1 reticulocyte binding protein 2 homolog A [Plasmodium falciparum...	105.0	[0..2]	[136..2763]
RBP2A_PLAF7 - Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=1 SV... gi\|33413772 - gi\|33413772\|gb\|AAN39443.1\| normocyte binding protein 2a [Plasmodium falciparum]	105.0	[0..2]	[136..2763]
GL50803_4883 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=hypothetical protein \| location=GLCHR02:216520-... gi\|157433633, gi... - gi\|71078504\|ref\|XP_771761.1\| hypothetical protein GLP_546_74871_79250 [Giardia lamblia ATCC 50803], ... ctg02_33\|4883\|Hy... - protein	98.0	[0..2]	[137..416]
gi\|11353751 - pir\|\|A81937 IgA-specific metalloendopeptidase (EC 3.4.24.13) NMA0905 [imported] - Neisseria meningit... gi\|121051831, gi... - gi\|7379617\|emb\|CAB84182.1\| IgA1 protease [Neisseria meningitidis Z2491], gi\|218767823\|ref\|YP_0023423...	88.0	[0..4]	[135..1006]
gi\|163939964, gi... - gi\|89209079\|ref\|ZP_01187543.1\| Excalibur [Bacillus weihenstephanensis KBAB4], gi\|89152999\|gb\|EAR7310...	86.0	[0..5]	[125..153]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKRKRHRG QRRRQRLRRR RQQQEEQQEQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ  60
   61 QQQQQQQQQQ CQQCQQCQQL QQQEQQQQQQ QQQQQQQQQQ QRRRRNNRRS RRSRKSKKSR 120
  121 RNRRTRNTRR RRRRNNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits