YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153792186, gi...
Organism:	Homo sapiens
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153792186, gi....

Description	E-value	Query Range	Subject Range
gi\|73976701 - gi\|73976701\|ref\|XP_848612.1\| PREDICTED: similar to claudin 19 (predicted) [Canis familiaris]	1.0E-59	[1..211]	[92..302]
gi\|109113069, gi... - gi\|109113069\|ref\|XP_001107331.1\| PREDICTED: claudin 7 isoform 2 [Macaca mulatta], gi\|109113067\|ref\|X... CCDS11096.1_1 - null	6.0E-58	[1..211]	[1..211]
gi\|61889099, gi\|... - gi\|61889099\|ref\|NP_113887.2\| claudin 1 [Rattus norvegicus], gi\|38303939\|gb\|AAH61992.1\| Claudin 1 [Ra...	7.0E-58	[1..211]	[1..211]
gi\|60655391, gi\|... - gi\|60655393\|gb\|AAX32260.1\| claudin 7 [synthetic construct], gi\|60655391\|gb\|AAX32259.1\| claudin 7 [sy... CLDN7 - claudin 7	8.0E-58	[1..211]	[1..211]
CLD1_MOUSE - Claudin-1 OS=Mus musculus GN=Cldn1 PE=1 SV=1	8.0E-58	[1..211]	[1..211]
gi\|61372555, gi\|... - gi\|61372562\|gb\|AAX43866.1\| claudin 7 [synthetic construct], gi\|61372555\|gb\|AAX43865.1\| claudin 7 [sy...	9.0E-58	[1..211]	[1..211]
gi\|114666120, gi... - gi\|114666124\|ref\|XP_001169618.1\| PREDICTED: claudin 7 isoform 2 [Pan troglodytes], gi\|114666122\|ref\|...	3.0E-57	[1..211]	[1..211]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSGLQLLG FSMALLGWVG LVACTAIPQW QMSSYAGDNI ITAQAMYKGL WMDCVTQSTG  60
   61 MMSCKMYDSV LALSAALQAT RALMVVSLVL GFLAMFVATM GMKCTRCGGD DKVKKARIAM 120
  121 GGGIIFIVAG LAALVACSWY GHQIVTDFYN PLIPTNIKYE FGPAIFIGWA GSALVILGGA 180
  181 LLSCSCPGNE SKAGYRVPRS YPKSNSSKEY V

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	97.744727
Match:	PF00822.11
Description:	No description for PF00822.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits