YRC Public Data Repository - Protein Structure Prediction

Protein:	SPIN1_PONPY
Organism:	Pongo pygmaeus
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPIN1_PONPY.

Description	E-value	Query Range	Subject Range
gi\|61370806, gi\|... - gi\|61370806\|gb\|AAX43555.1\| spindlin [synthetic construct], gi\|61370800\|gb\|AAX43554.1\| spindlin [synt...	0.0	[1..262]	[1..262]
gi\|57036090 - gi\|57036090\|ref\|XP_533554.1\| PREDICTED: similar to spindlin isoform 2 isoform 1 [Canis familiaris] gi\|76668394 - gi\|76668394\|ref\|XP_614403.2\| PREDICTED: similar to spindlin isoform 1 [Bos taurus]	0.0	[1..262]	[1..262]
SPIN1_MOUSE - Spindlin-1 OS=Mus musculus GN=Spin1 PE=1 SV=2 tr\|G3IF87\|G3IF87... - Spindlin-1 OS=Cricetulus griseus GN=I79_022407 PE=4 SV=1	0.0	[1..262]	[1..262]
SPINZ_CHICK - Spindlin-Z OS=Gallus gallus GN=SPINZ PE=2 SV=1 gi\|542154818\|ref... - PREDICTED: spindlin-Z-like [Zonotrichia albicollis] gi\|224088679 - gi\|224088679\|ref\|XP_002193394.1\| PREDICTED: similar to spindlin [Taeniopygia guttata]	0.0	[1..262]	[1..262]
SPIN1_RAT - Spindlin-1 OS=Rattus norvegicus GN=Spin1 PE=2 SV=1	0.0	[1..262]	[1..262]
gi\|76668402 - gi\|76668402\|ref\|XP_879536.1\| PREDICTED: similar to spindlin isoform 2 isoform 5 [Bos taurus]	0.0	[1..262]	[1..263]
gi\|148234599, gi... - gi\|66910801\|gb\|AAH97748.1\| MGC115436 protein [Xenopus laevis], gi\|148234599\|ref\|NP_001089504.1\| hypo...	0.0	[1..262]	[1..262]
gi\|109112088 - gi\|109112088\|ref\|XP_001088482.1\| PREDICTED: similar to spindlin isoform 2 isoform 2 [Macaca mulatta]	0.0	[1..262]	[1..262]
gi\|163915448, gi... - gi\|62860014\|ref\|NP_001017097.1\| spindlin [Xenopus (Silurana) tropicalis], gi\|163915448\|gb\|AAI57271.1...	0.0	[1..262]	[1..262]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTPFGKTPG QRSRADAGHA GVSANMMKKR TSHKKHRSSV GPSKPVSQPR RNIVGCRIQH  60
   61 GWKEGNGPVT QWKGTVLDQV PVNPSLYLIK YDGFDCVYGL ELNKDERVSA LEVLPDRVAT 120
  121 SRISDAHLAD TMIGKAVEHM FETEDGSKDE WRGMVLARAP VMNTWFYITY EKDPVLYMYQ 180
  181 LLDDYKEGDL RIMPDSNDSP PAEREPGEVV DSLVGKQVEY AKEDGSKRTG MVIHQVEAKP 240
  241 SVYFIKFDDD FHIYVYDLVK TS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	124.0
Match:	2ns2A
Description:	No description for 2ns2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits