YRC Public Data Repository - Protein Structure Prediction

Protein:	TM111_PONPY
Organism:	Pongo pygmaeus
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TM111_PONPY.

Description	E-value	Query Range	Subject Range
EMC3_RAT - ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 EMC3_MOUSE - ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3	433.0	[0..1]	[261..1]
EMC3_BOVIN - ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3	432.0	[0..1]	[261..1]
gi\|50754191 - gi\|50754191\|ref\|XP_414280.1\| PREDICTED: hypothetical protein [Gallus gallus]	424.0	[0..1]	[261..1]
gi\|56673106 - gi\|56673106\|gb\|AAW19648.1\| 30kDa protein [Danio rerio]	424.0	[0..1]	[261..1]
gi\|47229601 - gi\|47229601\|emb\|CAG06797.1\| unnamed protein product [Tetraodon nigroviridis]	421.0	[0..1]	[261..1]
gi\|62858123 - gi\|62858123\|ref\|NP_001016907.1\| partial optokinetic response b [Xenopus (Silurana) tropicalis]	416.0	[0..1]	[261..1]
gi\|147904527, gi... - gi\|56270439\|gb\|AAH87323.1\| LOC495954 protein [Xenopus laevis], gi\|147904527\|ref\|NP_001088690.1\| hypo...	391.0	[0..1]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPELLLDS NIRLWVVLPI VIITFFVGMI RHYVSILLQS DKKLTQEQVS DSQVLIRSRV  60
   61 LRENGKYIPK QSFLTRKYYF NNPEDGFFKK TKRKVVPPSP MTDPTMLTDM MKGNVTNVLP 120
  121 MILIGGWINM TFSGFVTTKV PFPLTLRFKP MLQQGIELLT LDASWVSSAS WYFLNVFGLR 180
  181 SIYSLIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQDNAADQSR MMQEQMTGAA MAMPADTNKA FKTEWEALEL TDHQWALDDV EEELMAKDLH  60
   61 FEGMFKKELQ TSIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits