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View Structure Prediction Details

Protein: gi|30250191, gi|...
Organism: Nitrosomonas europaea ATCC 19718
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30250191, gi|....

Description E-value Query
Range
Subject
Range
gi|25309714 - pir||E95867 conserved hypothetical protein [imported] - Sinorhizobium meliloti (strain 1021) magapla...
gi|16263953, gi|... - gi|16263953|ref|NP_436745.1| hypothetical protein SM_b20212 [Sinorhizobium meliloti 1021], gi|151400...
205.0 [0..1] [225..1]

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Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKILVVLT SVEKYPEMDR ATGLWLGEAV HFVRKVEAAG YEVDYVSPQG GYTPIDPHSL  60
   61 AMAEPIDWEW YQKKEFMNRL GKTMKASEVN PDDYIAIYYA GGHGVIWDFP DNEELQSISR 120
  121 KIYENGGIVS SVCHGAAGLL NIKLSNGSLL VKGKELTGFS NEEEKLAELD KFVPFLTETE 180
  181 LLARGAIYKK ADEPWVSFAV EDNRLITGQN PASGGAVADL LIKALKNELR HLLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.39794
Match: 1u9cA
Description: Crystallographic structure of APC35852
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.761311388604334 bayes_pls_golite062009
binding 0.674707430307546 bayes_pls_golite062009
ligase activity 0.314215307503825 bayes_pls_golite062009
hydrolase activity 0.132707384514464 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle