YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30179962, gi\|...
Organism:	Nitrosomonas europaea ATCC 19718
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30179962, gi|....

Description	E-value	Query Range	Subject Range
gi\|17431884 - gi\|17431884\|emb\|CAD18562.1\| probable chemotaxis (motility protein a) transmembrane [Ralstonia solana... gi\|17549630 - gi\|17549630\|ref\|NP_522970.1\| flagellar motor protein MotA [Ralstonia solanacearum GMI1000] gi\|83725780, gi\|... - gi\|83747600\|ref\|ZP_00944637.1\| Probable chemotaxis motA protein [Ralstonia solanacearum UW551], gi\|8... gi\|207725017, gi... - gi\|207725017\|ref\|YP_002255414.1\| chemotaxis protein (motility protein a) [Ralstonia solanacearum Mol... gi\|207738643, gi... - gi\|207738643\|ref\|YP_002257036.1\| chemotaxis protein (motility protein a) [Ralstonia solanacearum IPO...	252.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAIGYVVV IVSVFGGFAM AGGHLGSLFQ PVELIMIAGA AVGAFFVGNS GKAIKATFKA  60
   61 LPYIFRDANY TKSVYMELMT LLYEILGKIR KEGLMSIEAD VDDPGKSPLF GKYPKIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDHHATEFIT DYLRLMVGGN LNPLEIENLM DGEIETHHQE GEVPVHVISK MGDALPAFGI  60
   61 VAAVMGVVHT MESVGIPPAE LGKLIAAALV GTFLGILLAY GFIGPLANRL EQRLHESGKL 120
  121 LECVKVTLLA NLNGYAPALA VEFGRKVLFS TERPSFAELE KHIKQSKAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits