YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54639054, gi\|...
Organism:	Drosophila pseudoobscura
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54639054, gi|....

Description	E-value	Query Range	Subject Range
gi\|55241489, gi\|... - gi\|58383799\|ref\|XP_312806.2\| AGAP003119-PA [Anopheles gambiae str. PEST], gi\|55241489\|gb\|EAA08471.2\|... gi\|5690414 - gi\|5690414\|gb\|AAD47075.1\|AF164151_1 translation initiation factor 4C (1A) [Anopheles gambiae]	182.0	[0..1]	[148..1]
gi\|7264651 - gi\|7264651\|gb\|AAF44294.1\|AF169359_1 eukaryotic translation initiation factor 1A [Drosophila melanoga...	181.0	[0..1]	[148..1]
gi\|91079674 - gi\|91079674\|ref\|XP_967161.1\| PREDICTED: similar to Eukaryotic initiation factor 1A CG8053-PA [Tribol...	179.0	[0..1]	[148..1]
gi\|108880038, gi... - gi\|94469168\|gb\|ABF18433.1\| translation initiation factor 1A [Aedes aegypti], gi\|157105742\|ref\|XP_001...	177.0	[0..1]	[148..1]
gi\|94419740, gi\|... - gi\|94419740\|ref\|XP_001001548.1\| PREDICTED: similar to X-linked eukaryotic translation initiation fac...	176.0	[0..1]	[145..1]
gi\|151301107, gi... - gi\|87248491\|gb\|ABD36298.1\| eukaryotic translation initiation factor 1A [Bombyx mori], gi\|151301107\|r...	174.0	[0..1]	[145..1]
gi\|68359915, gi\|... - gi\|68359915\|ref\|XP_694296.1\| PREDICTED: similar to eukaryotic translation initiation factor 1A, Y-li...	173.0	[0..1]	[145..1]
gi\|83320111, gi\|... - gi\|83320111\|ref\|NP_001020500.1\| eukaryotic translation initiation factor 1A, X-linked [Bos taurus], ...	172.0	[0..1]	[132..1]
gi\|30584999, gi\|... - gi\|61371489\|gb\|AAX43676.1\| eukaryotic translation initiation factor 1A X-linked [synthetic construct...	172.0	[0..1]	[132..1]

Back

Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNKGKGGK NRRRGKNENE FEKRELIFKE DQQEYAQVTK MLGNGRLEAM CFDGVKRLCH  60
   61 IRGKLRKKVW INQGDIILVG LRDYQDSKAD VILKYTPDEA RNLKTYGEFP ESVRINETVT 120
  121 FVEDGFDEDI EFGDEISSED DADSVDNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	1d7qA
Description:	Translation initiation factor-1a, eIF1a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits