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View Structure Prediction Details

Protein: gi|18855056, gi|...
Organism: Oryza sativa Japonica Group
Length: 143 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18855056, gi|....

Description E-value Query
Range
Subject
Range
gi|108711861 - gi|108711861|gb|ABF99656.1| expressed protein [Oryza sativa (japonica cultivar-group)]
177.0 [0..1] [143..1]
gi|15810629, gi|... - gi|21593498|gb|AAM65465.1| unknown [Arabidopsis thaliana], gi|18394756|ref|NP_564090.1| unknown prot...
138.0 [0..1] [139..1]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLMAGWDS PVLGDENRVL ARRNKSLTRE EVEAFWKQHG GEMMSGSPLG SPAAGGMARS  60
   61 APVSRSKAHA SSPRGGRIDP ATRVEGFFPH DDAAAAESPS KSHDWWTRSN WAFLNEPPQE 120
  121 EIAGKAQNYA PQFHVARIAT GNA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.289 a.1.1 Globin-like
View Download 0.289 a.1.1 Globin-like
View Download 0.279 c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.266 a.118.8 TPR-like
View Download 0.213 d.162.1 LDH C-terminal domain-like
View Download 0.213 d.162.1 LDH C-terminal domain-like
View Download 0.209 d.162.1 LDH C-terminal domain-like
View Download 0.200 a.1.1 Globin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle