YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUA8_PANTR
Organism:	Pan troglodytes
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUA8_PANTR.

Description	E-value	Query Range	Subject Range
NDUA8_MOUSE - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Mus musculus GN=Ndufa8 PE=1 SV=3	4.0E-79	[1..171]	[1..171]
NDUA8_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo pygmaeus GN=NDUFA8 PE=2 SV=1 NDUA8_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo abelii GN=NDUFA8 PE=2 SV=1	6.0E-79	[1..172]	[1..172]
gi\|109110347 - gi\|109110347\|ref\|XP_001089493.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subco...	2.0E-77	[1..172]	[1..172]
NDUA8_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Bos taurus GN=NDUFA8 PE=1 SV=2	4.0E-77	[1..171]	[1..171]
gi\|57092131 - gi\|57092131\|ref\|XP_537861.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	6.0E-76	[1..171]	[1..171]
gi\|68367134, gi\|... - gi\|68367134\|ref\|XP_688659.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	4.0E-73	[1..170]	[1..170]
gi\|77748497, gi\|... - gi\|77748497\|gb\|AAI06588.1\| MGC131357 protein [Xenopus laevis], gi\|148236073\|ref\|NP_001089798.1\| hypo...	3.0E-71	[1..171]	[1..171]
gi\|114145517, gi... - gi\|33086512\|gb\|AAP92568.1\| Aa2-258 [Rattus norvegicus], gi\|114145517\|ref\|NP_001041327.1\| NADH dehydr...	7.0E-71	[17..170]	[34..187]
gi\|50757139 - gi\|50757139\|ref\|XP_415397.1\| PREDICTED: similar to LIM homeobox protein 6 isoform 1; LIM homeodomain...	1.0E-68	[17..171]	[1005..1159]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGIVELPTL EELKVDEVKI SSAVLKAAAH HYGAQCDKPN KEFMLCRWEE KDPRRCLEEG  60
   61 KLVNKCALDF FRQIKRHCAE PFTEYWTCID YTGQQLFRHC RKQQAKFDEC VLDKLGWVRP 120
  121 DLGELSKVTK VKTDRPLPEN PYHSRPRPDP SPEIEGDLQP ATHGSRFYFW TK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits