YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55630718
Organism:	Pan troglodytes
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55630718.

Description	E-value	Query Range	Subject Range
gi\|12052854, gi\|... - gi\|49065488\|emb\|CAG38562.1\| MRPL15 [Homo sapiens], gi\|12052854\|emb\|CAB66600.1\| hypothetical protein ... HGNC:14054\|MIM:6... - ribosomal protein L15 gi\|117644752 - gi\|117644752\|emb\|CAL37842.1\| hypothetical protein [synthetic construct]	0.0	[1..296]	[1..296]
gi\|73999382 - gi\|73999382\|ref\|XP_535072.2\| PREDICTED: similar to mitochondrial ribosomal protein L15 [Canis famili...	0.0	[1..296]	[1..296]
RM15_MOUSE - 39S ribosomal protein L15, mitochondrial OS=Mus musculus GN=Mrpl15 PE=1 SV=1	7.0E-98	[1..296]	[1..295]
RM15_BOVIN - 39S ribosomal protein L15, mitochondrial OS=Bos taurus GN=MRPL15 PE=1 SV=1	2.0E-96	[1..296]	[1..297]
gi\|62648573, gi\|... - gi\|62648573\|ref\|XP_216323.3\| PREDICTED: similar to mitochondrial ribosomal protein L15 [Rattus norve...	1.0E-95	[1..296]	[1..295]
gi\|109086417 - gi\|109086417\|ref\|XP_001082976.1\| PREDICTED: similar to mitochondrial ribosomal protein L15 [Macaca m...	9.0E-94	[53..296]	[90..333]
RM15_XENLA - 39S ribosomal protein L15, mitochondrial OS=Xenopus laevis GN=mrpl15 PE=2 SV=1	3.0E-90	[3..296]	[2..296]
RM15_CHICK - 39S ribosomal protein L15, mitochondrial OS=Gallus gallus GN=MRPL15 PE=2 SV=1	3.0E-89	[12..296]	[12..297]

Back

Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPLQGGGA RALDLLRGLP RVSLANLKPN PGSKKPERRP RGRRRGRKCG RGHKGERQRG  60
   61 TRPRLGFEGG QTPFYIRIPK YGFNEGHSFR RQYKPLSLNR LQYLIDLGRV DPSQPIDLTQ 120
  121 LVNGRGVTIQ PLKRDYGVQL VEEGADTFTA KVNIEVQLAS ELAIAAIEKN GGVVTTAFY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1p85J
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.4893803036544	bayes_pls_golite062009
structural molecule activity	8.91740015840503	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [180-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPRSLDIVCK PVPFFLRGQP IPKRMLPPEE LVPYYTDAKN RGYLADPAKF PEARLELARK  60
   61 YGYILPDITK DELFKMLCTR KDPRQIFFGL APGWVVNMAD KKILKPTDEN LLKYYTS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: