YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16131750, gi\|...
Organism:	Escherichia coli K-12
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16131750, gi|....

Description	E-value	Query Range	Subject Range
gi\|13364312, gi\|... - gi\|15834090\|ref\|NP_312863.1\| hypothetical protein ECs4836 [Escherichia coli O157:H7], gi\|13364312\|db... gi\|209747424, gi... - pir\|\|D86080 hypothetical protein yiiM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518809, gi\|... - gi\|15804500\|ref\|NP_290540.1\| hypothetical protein Z5455 [Escherichia coli O157:H7 EDL933], gi\|125188... gi\|13364312, gi\|... - gi\|15834090\|ref\|NP_312863.1\| hypothetical protein ECs4836 [Escherichia coli O157:H7 str. Sakai], gi\|...	265.0	[0..1]	[234..1]
gi\|227885349, gi... - gi\|227885349\|ref\|ZP_04003154.1\| MOSC domain protein [Escherichia coli 83972], gi\|227837725\|gb\|EEJ481... gi\|91075025, gi\|... - gi\|91213451\|ref\|YP_543437.1\| hypothetical protein YiiM [Escherichia coli UTI89], gi\|91075025\|gb\|ABE0... gi\|26250676, gi\|... - gi\|26250676\|ref\|NP_756716.1\| Hypothetical protein yiiM [Escherichia coli CFT073], gi\|26111107\|gb\|AAN...	263.0	[0..1]	[234..1]
gi\|39654307, gi\|... - gi\|39654308\|pdb\|1O65\|C Chain C, Crystal Structure Of An Hypothetical Protein, gi\|39654307\|pdb\|1O65\|B...	261.0	[0..1]	[234..3]
gi\|24054490, gi\|... - ref\|NP_709716.1\| hypothetical protein SF3989 [Shigella flexneri 2a str. 301], gb\|AAN45423.1\| orf, c... gi\|74314411, gi\|... - gi\|74314411\|ref\|YP_312830.1\| hypothetical protein SSON_4080 [Shigella sonnei Ss046], gi\|73857888\|gb\|...	261.0	[0..1]	[234..1]
gi\|75176704 - gi\|75176704\|ref\|ZP_00696832.1\| COG2258: Uncharacterized protein conserved in bacteria [Shigella boyd...	261.0	[0..1]	[234..1]
gi\|81243070, gi\|... - gi\|82778922\|ref\|YP_405271.1\| hypothetical protein SDY_3836 [Shigella dysenteriae Sd197], gi\|81243070...	261.0	[0..1]	[234..1]
gi\|238798343, gi... - gi\|77960727\|ref\|ZP_00824586.1\| COG2258: Uncharacterized protein conserved in bacteria [Yersinia moll...	257.0	[0..12]	[234..1]
gi\|17428171 - gi\|17428171\|emb\|CAD14859.1\| conserved hypothetical protein [Ralstonia solanacearum GMI1000] gi\|17545876 - gi\|17545876\|ref\|NP_519278.1\| hypothetical protein RSc1157 [Ralstonia solanacearum GMI1000]	256.0	[0..9]	[233..4]
gi\|254181465, gi... - gi\|99911475\|ref\|ZP_01318335.1\| hypothetical protein Bpse1_03002216 [Burkholderia pseudomallei 1655],... gi\|237811200, gi... - gi\|237811200\|ref\|YP_002895651.1\| mosc domain protein [Burkholderia pseudomallei MSHR346], gi\|2375048...	255.0	[0..8]	[233..2]
gi\|115515302, gi... - gi\|117626178\|ref\|YP_859501.1\| hypothetical protein APECO1_2558 [Escherichia coli APEC O1], gi\|115515... gi\|226902879, gi... - gi\|237702942\|ref\|ZP_04533423.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	254.0	[0..7]	[234..2]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFLVEREQ MRYPVDVYTG KIQAYPEGKP SAIAKIQVDG ELMLTELGLE GDEQAEKKVH  60
   61 GGPDRALCHY PREHYLYWAR EFPEQAELFV APAFGENLST DGLTESNVYM GDIFRWGEAL 120
  121 IQVSQPRSPC YKLNYHFDIS DIAQLMQNTG KVGWLYSVIA PGKVSADAPL ELVSRVSDVT 180
  181 VQEAAAIAWH MPFDDDQYHR LLSAAGLSKS WTRTMQKRRL SGKIEDFSRR LWGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.0
Match:	1o65A
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.442129199706088	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: