YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55633227
Organism:	Pan troglodytes
Length:	411 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55633227.

Description	E-value	Query Range	Subject Range
gi\|15929058 - gi\|15929058\|gb\|AAH14985.1\|AAH14985 small nuclear RNA activating complex, polypeptide 3, 50kD [Homo s...	0.0	[2..411]	[1..410]
SNPC3_MACFA - snRNA-activating protein complex subunit 3 OS=Macaca fascicularis GN=SNAPC3 PE=2 SV=1 gi\|109111491 - gi\|109111491\|ref\|XP_001110647.1\| PREDICTED: similar to small nuclear RNA activating complex, polypep...	0.0	[1..411]	[1..412]
SNPC3_MOUSE - snRNA-activating protein complex subunit 3 OS=Mus musculus GN=Snapc3 PE=1 SV=2	0.0	[1..411]	[1..407]
SNPC3_RAT - snRNA-activating protein complex subunit 3 OS=Rattus norvegicus GN=Snapc3 PE=2 SV=1	0.0	[1..411]	[1..407]
gi\|194034112 - gi\|194034112\|ref\|XP_001927778.1\| PREDICTED: similar to small nuclear RNA activating complex, polypep... SNPC3_BOVIN - snRNA-activating protein complex subunit 3 OS=Bos taurus GN=SNAPC3 PE=2 SV=1	0.0	[1..411]	[1..412]
gi\|73971672 - gi\|73971672\|ref\|XP_853813.1\| PREDICTED: similar to small nuclear RNA activating complex, polypeptide...	0.0	[1..411]	[1..412]
gi\|114623827 - gi\|114623827\|ref\|XP_001148816.1\| PREDICTED: small nuclear RNA activating complex, polypeptide 3, 50k...	0.0	[1..411]	[1..361]
gi\|189514764, gi... - gi\|41055458\|ref\|NP_957409.1\| hypothetical protein LOC394090 [Danio rerio], gi\|29791673\|gb\|AAH50516.1...	0.0	[28..411]	[12..378]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGSRGGPT CSGVGGRQDP VSGSGGCNFP EYELPELNTR AFHVGAFGEL WRGRLRGAGD  60
   61 LSLREPPASA LPGSQAADSD REDAAVARDL DCSLEAAAEL RAVCGLDKLK CLEDGEDPEV 120
  121 IPENTDLVTL GVRKRFLEHR EETITIDRAC RQETFVYEME SHAI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [165-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKKPENSADM IEEGELILSV NILYPVIFHK HKEHKPYQTM LVLGSQKLTQ LRDSIRCVSD  60
   61 LQIGGEFSNT PDQAPEHISK DLYKSAFFYF EGTFYNDKRY PECRDLSRTI IEWSESHDRG 120
  121 YGKFQTARME DFTFNDLCIK LGFPYLYCHQ GDCEHVIVIT DIRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [329-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHHDDCLDRT LYPLLIKKHW LWTRKCFVCK MYTARWVTNN DSFAPEDPCF FCDVCFRMLH  60
   61 YDSEGNKLGE FLAYPYVDPG TFN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits