YRC Public Data Repository - Protein Structure Prediction

Protein:	PIMT1_ARATH
Organism:	Arabidopsis thaliana
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIMT1_ARATH.

Description	E-value	Query Range	Subject Range
PIMT_ARATH - Protein-L-isoaspartate O-methyltransferase - Arabidopsis thaliana (Mouse-ear cress)	223.0	[0..1]	[230..1]
gi\|115477769, gi... - gi\|51965092\|ref\|XP_507330.1\| PREDICTED OJ1150_A11.18 gene product [Oryza sativa (japonica cultivar-g...	211.0	[0..3]	[230..4]
PIMT_METKA - Protein-L-isoaspartate O-methyltransferase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 96... PIMT_METKA - Protein-L-isoaspartate O-methyltransferase OS=Methanopyrus kandleri GN=pcm PE=3 SV=1	197.0	[0..9]	[226..8]
PIMT_WHEAT - Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1	197.0	[0..1]	[228..1]
gi\|50747636 - gi\|50747636\|ref\|XP_420939.1\| PREDICTED: similar to Pcmt1-prov protein [Gallus gallus]	190.0	[0..4]	[230..21]
PIMT2_ARCFU - Protein-L-isoaspartate O-methyltransferase 2 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / ... PIMT2_ARCFU, PIM... - Protein-L-isoaspartate O-methyltransferase 2 OS=Archaeoglobus fulgidus GN=pcm2 PE=3 SV=1, (O27962) P...	190.0	[0..7]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQFWSPSSI NKNKAMVENL QNHGIVTSDE VAKAMEAVDR GVFVTDRSSA YVDSPMSIGY  60
   61 NVTISAPHMH AMCLQLLEKH LKPGMRVLDV GSGTGYLTAC FAVMVGTEGR AIGVEHIPEL 120
  121 VASSVKNIEA SAASPFLKEG SLAVHVGDGR QGWAEFAPYD AIHVGAAAPE IPEALIDQLK 180
  181 PGGRLVIPVG NIFQDLQVVD KNSDGSVSIK DETSVRYVPL TSREAQLRGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1i1nA
Description:	Protein-L-isoaspartyl O-methyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits