YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11352925
Organism:	Neisseria meningitidis
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11352925.

Description	E-value	Query Range	Subject Range
gi\|32029875, gi\|... - gi\|32029875\|ref\|ZP_00132829.1\| COG4384: Mu-like prophage protein gp45 [Haemophilus somnus 2336], gi\|...	218.0	[0..4]	[220..5]
gi\|34495800, gi\|... - gi\|34495800\|ref\|NP_900015.1\| bacteriophage base plate protein [Chromobacterium violaceum ATCC 12472]...	209.0	[0..6]	[220..1]
gi\|33577031, gi\|... - gi\|33602589\|ref\|NP_890149.1\| hypothetical protein BB3614 [Bordetella bronchiseptica RB50], gi\|335770...	206.0	[0..6]	[221..1]
gi\|77957286 - gi\|77957286\|ref\|ZP_00821346.1\| COG4384: Mu-like prophage protein gp45 [Yersinia bercovieri ATCC 4397...	201.0	[0..6]	[220..1]
gi\|6900390, gi\|1... - gi\|6900390\|emb\|CAB72002.1\| hypothetical protein [Neisseria meningitidis], pir\|\|B81809 hypothetical p... gi\|7380468, gi\|1... - gi\|7380468\|emb\|CAB85054.1\| hypothetical protein [Neisseria meningitidis Z2491], gi\|218768602\|ref\|YP_...	190.0	[0..7]	[219..3]
gi\|241909547, gi... - gi\|241909547\|ref\|ZP_04794077.1\| phage baseplate assembly protein V [Desulfovibrio vulgaris RCH1], gi... gi\|46450549, gi\|... - gi\|46581128\|ref\|YP_011936.1\| phage baseplate assembly protein V, putative [Desulfovibrio vulgaris su...	183.0	[0..6]	[217..1]
gi\|157077835, gi... - gi\|75190000\|ref\|ZP_00703267.1\| COG4384: Mu-like prophage protein gp45 [Escherichia coli E24377A], gi... gi\|57904736 - gi\|57904736\|gb\|AAW58981.1\| gp45 [Cloning vector MuNXKan] BP45_BPMU - Baseplate puncturing device gp45 OS=Enterobacteria phage Mu GN=Mup45 PE=1 SV=1	177.0	[0..8]	[220..7]
gi\|75208218, gi\|... - gi\|75208218\|ref\|ZP_00708587.1\| COG4384: Mu-like prophage protein gp45 [Escherichia coli B171], gi\|19...	174.0	[0..11]	[220..2]
gi\|33413713, gi\|... - gi\|33438912\|ref\|NP_878213.1\| gpV [Bacteriophage WPhi], gi\|33413713\|gb\|AAN28233.1\| gpV [Bacteriophage...	174.0	[0..1]	[219..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSKLAKKT AQTAKNIGET LRAAFRGKIT LVVSSEPIQR VQLSGLADET LQDLEHLQEY  60
   61 GFASHPPDGS EAVVIPLGGN TSHGVIVCSQ HGSYRIKNLK PGETAIFNHE GAKIVIKQGK 120
  121 IIEADCDVYR V

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.27
Match:	2p5zX
Description:	No description for 2p5zX was found.

Predicted Domain #2

Region A:
Residues: [132-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NCKQYEVNAA TDAKFNAPLV ETSAVLTAQG QINGNGGMAV EGGDGATFSG DVNQTGGSFN  60
   61 TDGDVVAGNI SLRQHPHTDS IGGKTLPAEP A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits