YRC Public Data Repository - Protein Structure Prediction

Protein:	THEM2_PONPY
Organism:	Pongo pygmaeus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THEM2_PONPY.

Description	E-value	Query Range	Subject Range
gi\|114605683 - gi\|114605683\|ref\|XP_001171713.1\| PREDICTED: hypothetical protein [Pan troglodytes]	1.0E-26	[1..140]	[1..140]
gi\|149031533, gi... - gi\|27685797\|ref\|XP_214475.1\| PREDICTED: similar to thioesterase superfamily member 2 [Rattus norvegi...	1.0E-26	[1..140]	[1..140]
ACO13_MOUSE - Acyl-coenzyme A thioesterase 13 OS=Mus musculus GN=Acot13 PE=1 SV=1	4.0E-26	[1..140]	[1..140]
FABZ_PSEE4 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas entomophila (strain L48) GN=fab... gi\|95112171 - gi\|95112171\|emb\|CAK16898.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Pseudomonas en...	3.0E-25	[6..140]	[2..145]
gi\|24983083, gi\|... - gi\|26988334\|ref\|NP_743759.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas putida KT2440], gi\|2...	3.0E-25	[2..140]	[16..162]
FABZ_PSEP1 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain F1 / ATCC 700007... tr\|I7BG72\|I7BG72... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain DOT-T1E) GN=fabZ... tr\|E4RFQ7\|E4RFQ7... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain BIRD-1) GN=fabZ ... FABZ_PSEPG - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain GB-1) GN=fabZ PE... FABZ_PSEPK - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain KT2440) GN=fabZ ...	4.0E-25	[6..140]	[2..145]
gi\|52346102, gi\|... - gi\|52346102\|ref\|NP_001005098.1\| MGC89869 protein [Xenopus (Silurana) tropicalis], gi\|49900160\|gb\|AAH...	1.0E-24	[1..140]	[1..141]
gi\|74004150 - gi\|74004150\|ref\|XP_853542.1\| PREDICTED: similar to thioesterase superfamily member 2 [Canis familiar...	1.0E-24	[1..140]	[1..140]
FABZ_PSEU2 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. syringae (strain B... FABZ_PSE14 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas savastanoi pv. phaseolicola (st... tr\|F3G1L3\|F3G1L3... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. pisi str. 1704B GN... gi\|237800154 - gi\|237800154\|ref\|ZP_04588615.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas syringae pv. oryz...	7.0E-24	[6..139]	[2..144]
FABZ_LACLS - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Lactococcus lactis subsp. cremoris (strain ...	1.0E-23	[1..139]	[1..143]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSMTQSLRE VIKAMTKARN FERVLGKITL VSAAPGKVIC EMKVEEEHTN AIGTLHGGLT  60
   61 ATLVDNISTM ALLCTERGAP GVSVDMNITY MSPAKLGEDI VITAHVLKQG KTLAFTSVDL 120
  121 TNKATGKLIA QGRHTKHLGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2f0xA
Description:	No description for 2f0xA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.905010334318675	bayes_pls_golite062009
protein binding	0.0641694633066071	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: