YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24115593, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24115593, gi|....

Description	E-value	Query Range	Subject Range
gi\|13364802 - gi\|13364802\|dbj\|BAB38747.1\| putative structural protein [Escherichia coli O157:H7 str. Sakai] gi\|25391967, gi\|... - pir\|\|G86135 probable structural protein yjjP [imported] - Escherichia coli (strain O157:H7, substrai... gi\|195937637 - gi\|195937637\|ref\|ZP_03083019.1\| putative structural protein [Escherichia coli O157:H7 str. EC4024] gi\|12519390, gi\|... - gi\|15804938\|ref\|NP_290980.1\| putative structural protein [Escherichia coli O157:H7 EDL933], gi\|12519... gi\|13364802 - gi\|13364802\|dbj\|BAB38747.1\| putative structural protein [Escherichia coli O157:H7]	273.0	[0..1]	[277..1]
gi\|74314799, gi\|... - gi\|74314799\|ref\|YP_313218.1\| putative structural protein [Shigella sonnei Ss046], gi\|73858276\|gb\|AAZ... gi\|187429416, gi... - gi\|187732424\|ref\|YP_001883028.1\| hypothetical protein SbBS512_E4904 [Shigella boydii CDC 3083-94], g... gi\|226840482, gi... - gi\|254037376\|ref\|ZP_04871453.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684048...	272.0	[0..1]	[277..1]
gi\|81248128, gi\|... - gi\|82546717\|ref\|YP_410664.1\| putative structural protein [Shigella boydii Sb227], gi\|81248128\|gb\|ABB...	272.0	[0..1]	[277..1]
gi\|26111682, gi\|... - gi\|26251249\|ref\|NP_757289.1\| hypothetical protein c5443 [Escherichia coli CFT073], gi\|26111682\|gb\|AA... gi\|227885150, gi... - gi\|227885150\|ref\|ZP_04002955.1\| membrane protein [Escherichia coli 83972], gi\|227837979\|gb\|EEJ48445.... gi\|117626678, gi... - gi\|117626678\|ref\|YP_860001.1\| hypothetical protein APECO1_2060 [Escherichia coli APEC O1], gi\|115515... gi\|91075592, gi\|... - gi\|91214018\|ref\|YP_544004.1\| hypothetical protein UTI89_C5070 [Escherichia coli UTI89], gi\|91075592\|...	271.0	[0..1]	[277..1]
gi\|75198181 - gi\|75198181\|ref\|ZP_00708251.1\| COG2966: Uncharacterized conserved protein [Escherichia coli HS]	269.0	[0..4]	[277..1]
gi\|38704263 - gi\|38704263\|ref\|NP_313351.2\| putative structural protein [Escherichia coli O157:H7 str. Sakai] gi\|217324715, gi... - gi\|217324715\|ref\|ZP_03440799.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|209162387, gi... - gi\|209400987\|ref\|YP_002273886.1\| hypothetical protein ECH74115_5877 [Escherichia coli O157:H7 str. E... gi\|208821589, gi... - gi\|208821589\|ref\|ZP_03261909.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|208733589, gi... - gi\|208812312\|ref\|ZP_03253641.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|208727629, gi... - gi\|208807828\|ref\|ZP_03250165.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|189379572, gi... - gi\|189405599\|ref\|ZP_02822943.2\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|... gi\|189404644, gi... - gi\|189404644\|ref\|ZP_02810014.2\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189365040, gi... - gi\|189404534\|ref\|ZP_03007494.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi... gi\|189364318, gi... - gi\|189402858\|ref\|ZP_03006867.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi... gi\|189000735, gi... - gi\|189010380\|ref\|ZP_03006303.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi... gi\|187776286, gi... - gi\|187776286\|ref\|ZP_02801665.2\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi... gi\|38704263 - gi\|38704263\|ref\|NP_313351.2\| putative structural protein [Escherichia coli O157:H7]	268.0	[0..4]	[277..1]
gi\|75189074 - gi\|75189074\|ref\|ZP_00702341.1\| COG2966: Uncharacterized conserved protein [Escherichia coli E24377A]	268.0	[0..4]	[277..1]
gi\|75515556 - gi\|75515556\|ref\|ZP_00737713.1\| COG2966: Uncharacterized conserved protein [Escherichia coli 53638]	268.0	[0..4]	[277..1]
gi\|193066717, gi... - gi\|75255095\|ref\|ZP_00726991.1\| COG2966: Uncharacterized conserved protein [Escherichia coli E22], gi...	267.0	[0..4]	[277..1]
gi\|159122248 - gi\|159122248\|gb\|EDP47370.1\| DUF1212 domain membrane protein [Aspergillus fumigatus A1163] gi\|70981985, gi\|... - gi\|70981985\|ref\|XP_746521.1\| DUF1212 domain membrane protein [Aspergillus fumigatus Af293], gi\|66844...	250.0	[0..11]	[274..400]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQMDSHYLN NTQHVYDKGR VMQTEQQRAV TRLCIQCGLF LLQHGAESAL VDELSSRLGR  60
   61 ALGMDSVESS ISSNAIVLTT IKDGQCLTST RKNHDRGINM HVVTEVQHIV ILAEHHLLDY 120
  121 KGVEKRFSQI QPLRYPRWLV ALMVGLSCAC FCKLNNGGWD GAVITFFAST TAMYIRQLLA 180
  181 QRHLHPQINF CLTAFAATTI SGLLLQLPTF SNTPTIA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.920819
Match:	PF06738.3
Description:	No description for PF06738.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [218-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVLLLVP GFPLINAVAD MFKGHINTGL ARWAIASLLT LATCVGVVMA LTIWGLRGWV  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits