YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55640643
Organism:	Pan troglodytes
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55640643.

Description	E-value	Query Range	Subject Range
GEMI2_MOUSE - Gem-associated protein 2 OS=Mus musculus GN=Gemin2 PE=2 SV=1	0.0	[12..280]	[1..269]
gi\|109083413 - gi\|109083413\|ref\|XP_001092707.1\| PREDICTED: similar to SMN-interacting protein 1 isoform alpha isofo... gi\|11182456 - gi\|11182456\|emb\|CAC16117.2\| survival interacting protein 1 [Homo sapiens]	0.0	[12..280]	[1..269]
GEMI2_RAT - Gem-associated protein 2 OS=Rattus norvegicus GN=Gemin2 PE=2 SV=1	0.0	[12..280]	[1..269]
gi\|114652754 - gi\|114652754\|ref\|XP_001146136.1\| PREDICTED: SMN-interacting protein 1 isoform 4 [Pan troglodytes] gi\|119586232, gi... - gi\|9650993\|dbj\|BAB03508.1\| SMN interacting protein1-beta [Homo sapiens], gi\|57165350\|ref\|NP_00100918...	0.0	[1..280]	[1..265]
gi\|114652752 - gi\|114652752\|ref\|XP_001146059.1\| PREDICTED: SMN-interacting protein 1 isoform 3 [Pan troglodytes] gi\|119586234 - gi\|119586234\|gb\|EAW65830.1\| survival of motor neuron protein interacting protein 1, isoform CRA_f [H...	0.0	[1..280]	[1..257]
gi\|76647460 - gi\|76647460\|ref\|XP_587385.2\| PREDICTED: similar to SMN-interacting protein 1 isoform alpha, partial ...	0.0	[1..267]	[51..317]
gi\|156717376, gi... - gi\|156717376\|ref\|NP_001096228.1\| hypothetical protein LOC100124782 [Xenopus (Silurana) tropicalis], ...	1.0E-99	[18..280]	[2..267]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRAELAGLK TMAWVPAESA VEELMPRLLP VEPCDLTEGF DPSVPPRTPQ EYLRRVQIEA  60
   61 AQCPDVVVAQ IDPKKLKRKQ SVNISLSGCQ PAPEGYSPTL QWQQQQVAQF STVRQNVNKH 120
  121 RSHWKSQQLD SNVTMPKSED EEGWKKFCLG EKLCADGAVG PATNESPGID YVQIGFPPLL 180
  181 SIVSRMNQAT VTSVLEYLSN WFGERDFTPE LGRWLYALLA CLEKPLLPEA HSLIRQLARR 240
  241 CSEVRLLVDS KDDERVPALN LLICLVSRYF DQRDLADEPS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits