YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55623062, gi\|...
Organism:	Pan troglodytes
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55623062, gi|....

Description	E-value	Query Range	Subject Range
gi\|73973376 - gi\|73973376\|ref\|XP_852962.1\| PREDICTED: similar to homolog of yeast long chain polyunsaturated fatty...	7.0E-68	[2..263]	[175..435]
gi\|50744984 - gi\|50744984\|ref\|XP_426204.1\| PREDICTED: similar to fatty acid elongase 1 [Gallus gallus]	4.0E-67	[7..263]	[553..808]
gi\|76672739 - gi\|76672739\|ref\|XP_610522.2\| PREDICTED: similar to elongation of very long chain fatty acids (FEN1/E...	2.0E-66	[7..261]	[442..697]
CCDS3690.1_1 - null gi\|109075355, gi... - gi\|109075355\|ref\|XP_001089881.1\| PREDICTED: similar to ELOVL family member 6, elongation of long cha...	7.0E-63	[1..265]	[1..265]
gi\|157134562, gi... - gi\|157134562\|ref\|XP_001656366.1\| elongase, putative [Aedes aegypti], gi\|108870432\|gb\|EAT34657.1\| elo...	2.0E-62	[1..264]	[1..270]
Baldspot-PB, Bal... - The gene Baldspot is referred to in FlyBase by the symbol Dmel\Baldspot (CG3971, FBgn0260960). It is... gi\|220943496, gi... - gi\|220953518\|gb\|ACL89302.1\| Baldspot-PA [synthetic construct], gi\|220943496\|gb\|ACL84291.1\| Baldspot-...	3.0E-62	[1..264]	[4..273]
gi\|54641815\|gb\|E... - GA17812-PA [Drosophila pseudoobscura], GA17812 [Drosophila pseudoobscura pseudoobscura] gi\|125978062, gi... - gi\|54641815\|gb\|EAL30565.1\| GA17812 [Drosophila pseudoobscura pseudoobscura], gi\|125978062\|ref\|XP_001...	1.0E-61	[1..264]	[4..273]
ELOV6_MOUSE - Elongation of very long chain fatty acids protein 6 OS=Mus musculus GN=Elovl6 PE=1 SV=1	2.0E-61	[1..265]	[1..267]
gi\|114607848 - gi\|114607848\|ref\|XP_527417.2\| PREDICTED: homolog of yeast long chain polyunsaturated fatty acid elon...	3.0E-61	[10..263]	[135..387]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMSVLTLQE YEFEKQFNEN EAIQWMQENW KKSFLFSALY AAFIFGGRHL MNKRAKFELR  60
   61 KPLVLWSLTL AVFSIFGALR TGAYMVYILM TKGLKQSVCD QGFYNGP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSKFWAYAFV LSKAPELGDT IFIILRKQKL IFLHWYHHIT VLLYSWYSYK DMVAGGGWFM  60
   61 TMNYGVHAVM YSYYALRAAG FRVSRKFAMF ITLSQITQML MGCVVNYLVF CWMQHDQCHS 120
  121 HFQNIFWSSL MYLSYLVLFC HFFFEAYIGK MRKTTKAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits