YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11280093
Organism:	Neisseria meningitidis
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11280093.

Description	E-value	Query Range	Subject Range
gi\|11280094 - pir\|\|A81980 hypothetical protein NMA0605 [imported] - Neisseria meningitidis (strain Z2491 serogroup... gi\|254672419 - gi\|254672419\|emb\|CBA05758.1\| hypothetical protein [Neisseria meningitidis serogroup W135] gi\|254804324, gi... - gi\|254804324\|ref\|YP_003082545.1\| putative endonuclease [Neisseria meningitidis], gi\|254667866\|emb\|CB... gi\|121051574, gi... - gi\|7379340\|emb\|CAB83895.1\| hypothetical protein NMA0605 [Neisseria meningitidis Z2491], gi\|218767566...	178.0	[0..1]	[129..1]
gi\|239998181 - gi\|239998181\|ref\|ZP_04718105.1\| hypothetical protein Ngon3_01665 [Neisseria gonorrhoeae 35/02] gi\|240112153 - gi\|240112153\|ref\|ZP_04726643.1\| hypothetical protein NgonM_00967 [Neisseria gonorrhoeae MS11] gi\|194097652, gi... - gi\|194097652\|ref\|YP_002000690.1\| hypothetical protein NGK_0065 [Neisseria gonorrhoeae NCCP11945], gi... gi\|240079945 - gi\|240079945\|ref\|ZP_04724488.1\| hypothetical protein NgonF_01323 [Neisseria gonorrhoeae FA19] gi\|240015807 - gi\|240015807\|ref\|ZP_04722347.1\| hypothetical protein NgonFA_01330 [Neisseria gonorrhoeae FA6140] gi\|240013364 - gi\|240013364\|ref\|ZP_04720277.1\| hypothetical protein NgonD_01717 [Neisseria gonorrhoeae DGI18] gi\|240122737 - gi\|240122737\|ref\|ZP_04735693.1\| hypothetical protein NgonP_02108 [Neisseria gonorrhoeae PID332] gi\|59800517, gi\|... - gi\|59800517\|ref\|YP_207229.1\| hypothetical protein NGO0050 [Neisseria gonorrhoeae FA 1090], gi\|597174... gi\|240120437 - gi\|240120437\|ref\|ZP_04733399.1\| hypothetical protein NgonPI_01402 [Neisseria gonorrhoeae PID24-1] gi\|240117102 - gi\|240117102\|ref\|ZP_04731164.1\| hypothetical protein NgonPID_01340 [Neisseria gonorrhoeae PID1] gi\|240114900 - gi\|240114900\|ref\|ZP_04728962.1\| hypothetical protein NgonPID1_01365 [Neisseria gonorrhoeae PID18] gi\|226511997, gi... - gi\|254492957\|ref\|ZP_05106128.1\| conserved hypothetical protein [Neisseria gonorrhoeae 1291], gi\|2265... gi\|3893841 - gi\|3893841\|gb\|AAC78450.1\| similar to E. coli ORF, encoded by GenBank Accession Number X97282; and to... gi\|240127440 - gi\|240127440\|ref\|ZP_04740101.1\| hypothetical protein NgonS_02122 [Neisseria gonorrhoeae SK-93-1035] gi\|240124930 - gi\|240124930\|ref\|ZP_04737816.1\| hypothetical protein NgonSK_01672 [Neisseria gonorrhoeae SK-92-679]	177.0	[0..1]	[129..1]
gi\|3893846 - gi\|3893846\|gb\|AAC78454.1\| similar to E. coli ORF, encoded by GenBank Accession Number X97282; and to...	174.0	[0..1]	[129..1]
gi\|3893838 - gi\|3893838\|gb\|AAC78448.1\| similar to E. coli ORF, encoded by GenBank Accession Number X97282; and to...	170.0	[0..1]	[122..1]
gi\|21647740, gi\|... - gi\|21674545\|ref\|NP_662610.1\| DNA methylase, putative [Chlorobium tepidum TLS], gi\|21647740\|gb\|AAM729...	147.0	[0..10]	[129..708]
gi\|53805208, gi\|... - gi\|53805208\|ref\|YP_113069.1\| DNA methyltransferase [Methylococcus capsulatus str. Bath], gi\|53758969...	144.0	[0..3]	[122..620]
gi\|194417923, gi... - gi\|83569486\|ref\|ZP_00920939.1\| COG2852: Uncharacterized protein conserved in bacteria [Shigella dyse...	142.0	[0..14]	[127..4]
gi\|24051605, gi\|... - gi\|24112688\|ref\|NP_707198.1\| hypothetical protein SF1294 [Shigella flexneri 2a str. 301], gi\|2405160... gi\|30041058, gi\|... - gi\|30062810\|ref\|NP_836981.1\| hypothetical protein S1376 [Shigella flexneri 2a str. 2457T], gi\|300410... gi\|81245665, gi\|... - gi\|82544254\|ref\|YP_408201.1\| hypothetical protein SBO_1773 [Shigella boydii Sb227], gi\|81245665\|gb\|A...	141.0	[0..14]	[127..4]
gi\|194437137, gi... - gi\|194437137\|ref\|ZP_03069236.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442412... EG12653 - DUF559 family endonuclease-related protein / DUF559 family endonuclease-related protein, function un... YCJD_ECOLI - Hypothetical protein ycjD - Escherichia coli gi\|124531738, gi... - gi\|124531738\|ref\|ZP_01701887.1\| protein of unknown function DUF559 [Escherichia coli B], gi\|12449838... gi\|170080968, gi... - gi\|170080968\|ref\|YP_001730288.1\| hypothetical protein ECDH10B_1406 [Escherichia coli str. K-12 subst... gi\|254161369, gi... - gi\|254161369\|ref\|YP_003044477.1\| hypothetical protein ECB_01266 [Escherichia coli B str. REL606], gi... gi\|169755272, gi... - gi\|170020344\|ref\|YP_001725298.1\| hypothetical protein EcolC_2336 [Escherichia coli ATCC 8739], gi\|16... EG12653 - DUF559 family endonuclease-related protein / DUF559 family endonuclease-related protein, function un... gi\|1742102, gi\|8... - gi\|89108135\|ref\|AP_001915.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... gi\|238900525, gi... - gi\|238900525\|ref\|YP_002926321.1\| hypothetical protein BWG_1121 [Escherichia coli BW2952], gi\|2388603... gi\|253977484, gi... - gi\|254288177\|ref\|YP_003053925.1\| hypothetical protein ECD_01266 [Escherichia coli BL21(DE3)], gi\|253... gi\|242377068, gi... - gi\|251784795\|ref\|YP_002999099.1\| hypothetical protein B21_01277 [Escherichia coli BL21], gi\|24237706...	141.0	[0..14]	[127..4]
gi\|186465243, gi... - gi\|23124944\|ref\|ZP_00106901.1\| COG2852: Uncharacterized protein conserved in bacteria [Nostoc puncti...	140.0	[0..9]	[120..12]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHEKLLTA DNPVLHQRAK AMRQEMSEAE AKLWQHLRAG RLNGYKFRRQ QPMGNYIVDF  60
   61 MCVTPKLIVE ADGGQHAEQA VYDHARTAYL NSLGFTVLRF WNHEILQQTN DVLAEILRVL 120
  121 QELEKQYAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.73
Match:	1cw0A
Description:	Very short patch repair (VSR) endonuclease
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits