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View Structure Prediction Details

Protein: CCA12_ARATH
Organism: Arabidopsis thaliana
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCA12_ARATH.

Description E-value Query
Range
Subject
Range
gi|11079479, gi|... - pir||A96803 probable mitotic cyclin a2-type [imported] - Arabidopsis thaliana, gi|11079479|gb|AAG291...
357.0 [0..1] [427..1]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSRNLSQ ENPIPRPNLA KTRTSLRDVG NRRAPLGDIT NQKNGSRNPS PSSTLVNCSN  60
   61 KIGQSKKAPK PALSRNWNLG ILDSGLPPKP NAKSNIIVPY EDTELLQSDD SLLCSSPALS 120
  121 LDASPTQSDP SISTHDSLTN HVVDYMVEST TDDGNDDDDD EIVNID

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDLMDPQLCA SFACDIYEHL RVSEVNKRPA LDYMERTQSS INASMRSILI DWLVEVAEEY  60
   61 RLSPETLYLA VNYVDRYLTG NAINKQNLQL LGVTCMMIAA KYEEVCVPQV EDFCYITDNT 120
  121 YLRNELLEME SSVLNYLKFE LTTPTAKCFL RRFLRAAQGR KEVPSLLSEC LACYLTELSL 180
  181 LDYAMLRYAP SLVAASAVFL AQYTLHPSRK PWNATLEHYT SYRAKHMEAC VKNLLQLCNE 240
  241 KLSSDVVAIR KKYSQHKYKF AAKKLCPTSL PQELFL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.221849
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle