YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CCB23_ARATH
Organism: Arabidopsis thaliana
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCB23_ARATH.

Description E-value Query
Range
Subject
Range
gi|8886952, gi|2... - gi|8886952|gb|AAF80638.1|AC069251_31 F2D10.10 [Arabidopsis thaliana], gi|8778595|gb|AAF79603.1|AC027...
408.0 [0..1] [429..1]

Back

Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS  60
   61 VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP DSVSSEEPET IIIDVDESDK 120
  121 EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [173-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAVEYIHDMH TFYKNFEKLS CVPPNYMDNQ QDLNERMRGI LIDWLIEVHY KFELMEETLY  60
   61 LTINVIDRFL AVHQIVRKKL QLVGVTALLL ACKYEEVSVP VVDDLILISD KAYSRREVLD 120
  121 MEKLMANTLQ FNFSLPTPYV FMKRFLKAAQ SDKKLEILSF FMIELCLVEY EMLEYLPSKL 180
  181 AASAIYTAQC TLKGFEEWSK TCEFHTGYNE KQLLACARKM VAFHHKAGTG KLTGVHRKYN 240
  241 TSKFCHAART EPAGFLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.69897
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle