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View Structure Prediction Details

Protein: CCA23_ARATH
Organism: Arabidopsis thaliana
Length: 450 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCA23_ARATH.

Description E-value Query
Range
Subject
Range
gi|8072394, gi|2... - gi|8072394|gb|AAF71982.1|AC013453_7 Putative cyclin [Arabidopsis thaliana], pir||F86289 probable cyc...
389.0 [0..1] [433..1]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE  60
   61 ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE VTDLQSRTDA KVEVASNTAG 120
  121 NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK 180
  181 DPLL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [185-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CCLYAPEIHY NLRVSELKRR PLPDFMERIQ KDVTQSMRGI LVDWLVEVSE EYTLASDTLY  60
   61 LTVYLIDWFL HGNYVQRQQL QLLGITCMLI ASKYEEISAP RIEEFCFITD NTYTRDQVLE 120
  121 MENQVLKHFS FQIYTPTPKT FLRRFLRAAQ ASRLSPSLEV EFLASYLTEL TLIDYHFLKF 180
  181 LPSVVAASAV FLAKWTMDQS NHPWNPTLEH YTTYKASDLK ASVHALQDLQ LNTKGCPLSA 240
  241 IRMKYRQEKY KSVAVLTSPK LLDTLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.522879
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle