YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15677244, gi\|...
Organism:	Neisseria meningitidis MC58
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15677244, gi|....

Description	E-value	Query Range	Subject Range
gi\|37197683, gi\|... - gi\|37678941\|ref\|NP_933550.1\| hypothetical protein VV0757 [Vibrio vulnificus YJ016], gi\|37197683\|dbj\|...	169.0	[0..20]	[126..1]
gi\|126208405, gi... - gi\|126208405\|ref\|YP_001053630.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae L20], gi... gi\|190150256, gi... - gi\|190150256\|ref\|YP_001968781.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae serovar ... gi\|165976348, gi... - gi\|165976348\|ref\|YP_001651941.1\| iron-binding protein [Actinobacillus pleuropneumoniae serovar 3 str... gi\|32034039 - gi\|32034039\|ref\|ZP_00134283.1\| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneu...	169.0	[0..20]	[126..1]
gi\|86145585, gi\|... - gi\|86145585\|ref\|ZP_01063915.1\| HesB family protein [Vibrio sp. MED222], gi\|85836556\|gb\|EAQ54682.1\| H... gi\|218321650, gi... - gi\|218708631\|ref\|YP_002416252.1\| HesB family protein [Vibrio splendidus LGP32], gi\|218321650\|emb\|CAV... gi\|84377461, gi\|... - gi\|84387616\|ref\|ZP_00990633.1\| HesB family protein [Vibrio splendidus 12B01], gi\|84377461\|gb\|EAP9432...	168.0	[0..20]	[126..1]
gi\|75857374, gi\|... - gi\|75857374\|ref\|ZP_00764990.1\| COG0316: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	168.0	[0..20]	[126..1]
gi\|27360021, gi\|... - gi\|27363904\|ref\|NP_759432.1\| HesB family protein [Vibrio vulnificus CMCP6], gi\|27360021\|gb\|AAO08959....	167.0	[0..20]	[126..1]
gi\|28897372, gi\|... - gi\|28897372\|ref\|NP_796977.1\| HesB family protein [Vibrio parahaemolyticus RIMD 2210633], gi\|28805584... gi\|28805584 - gi\|28805584\|dbj\|BAC58861.1\| HesB family protein [Vibrio parahaemolyticus RIMD 2210633]	167.0	[0..20]	[126..1]
gi\|41725506, gi\|... - gi\|71907581\|ref\|YP_285168.1\| HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA [Dechloromona...	167.0	[0..20]	[126..1]
gi\|145634628, gi... - gi\|145634628\|ref\|ZP_01790337.1\| scaffold protein [Haemophilus influenzae PittAA], gi\|145268173\|gb\|ED... gi\|145631829 - gi\|145631829\|ref\|ZP_01787588.1\| co-chaperone HscB [Haemophilus influenzae 22.4-21] gi\|229810556, gi... - gi\|229846463\|ref\|ZP_04466571.1\| hypothetical protein CGSHi7P49H1_07320 [Haemophilus influenzae 7P49H... gi\|145628732, gi... - gi\|145628732\|ref\|ZP_01784532.1\| co-chaperone HscB [Haemophilus influenzae 22.1-21], gi\|144979202\|gb\|... gi\|53732977 - gi\|53732977\|ref\|ZP_00155379.2\| COG0316: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|48868175, gi\|... - gi\|68248979\|ref\|YP_248091.1\| hypothetical protein NTHI0496 [Haemophilus influenzae 86-028NP], gi\|680... gi\|42630673 - gi\|42630673\|ref\|ZP_00156212.1\| COG0316: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|144982548 - gi\|144982548\|gb\|EDJ90102.1\| co-chaperone HscB [Haemophilus influenzae R3021] gi\|148827515, gi... - gi\|148827515\|ref\|YP_001292268.1\| hypothetical protein CGSHiGG_04690 [Haemophilus influenzae PittGG],... gi\|148715501, gi... - gi\|148825341\|ref\|YP_001290094.1\| hypothetical protein CGSHiEE_01125 [Haemophilus influenzae PittEE],... gi\|145638715, gi... - gi\|145638715\|ref\|ZP_01794324.1\| scaffold protein [Haemophilus influenzae PittII], gi\|145272310\|gb\|ED... gi\|145636356, gi... - gi\|145636356\|ref\|ZP_01792025.1\| scaffold protein [Haemophilus influenzae PittHH], gi\|145270521\|gb\|ED...	166.0	[0..20]	[126..1]
gi\|91190091, gi\|... - gi\|91225148\|ref\|ZP_01260370.1\| HesB family protein [Vibrio alginolyticus 12G01], gi\|91190091\|gb\|EAS7...	166.0	[0..20]	[126..1]
gi\|73540762, gi\|... - gi\|73540762\|ref\|YP_295282.1\| HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA [Ralstonia eu...	166.0	[0..21]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSEPPAASG PSGAVQQGRN MITLTENAAK HINDYLAKRG KGLGVRLGVK TSGCSGMAYN  60
   61 LEFVDEADGD DLIFEGHGAR IYIDPKSLVY LDGTQVDYTK EGLQEGFKFE NPNVKDSCGC 120
  121 GESFHV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1s98A
Description:	E.coli IscA crystal structure to 2.3 A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2 iron, 2 sulfur cluster binding	1.80248983815833	bayes_pls_golite062009
iron-sulfur cluster binding	1.47577968990921	bayes_pls_golite062009
metal cluster binding	1.47577968990921	bayes_pls_golite062009
binding	0.0602586837339399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: