YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108246
Organism:	Sus scrofa domesticus
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108246.

Description	E-value	Query Range	Subject Range
gi\|18254389 - gi\|18254389\|gb\|AAL66741.1\|AF460238_1 atrial natriuretic peptide hormone [Notomys alexis]	184.0	[0..1]	[150..1]
gi\|47847117 - gi\|47847117\|dbj\|BAD21299.1\| atrial natriuretic peptide [Camelus dromedarius]	183.0	[0..1]	[150..1]
ANF_RAT - Natriuretic peptides A OS=Rattus norvegicus GN=Nppa PE=1 SV=1	182.0	[0..1]	[150..1]
ANF_MOUSE - Natriuretic peptides A OS=Mus musculus GN=Nppa PE=1 SV=2	180.0	[0..1]	[150..1]
gi\|6687599, gi\|6... - gi\|6687599\|emb\|CAB65023.1\| atrial natriuretic peptide [Balaenoptera physalus], gi\|6686952\|emb\|CAB647...	178.0	[0..1]	[150..1]
ANF_RABIT - Natriuretic peptides A OS=Oryctolagus cuniculus GN=NPPA PE=2 SV=1	177.0	[0..1]	[150..1]
ANF_BOVIN - Natriuretic peptides A OS=Bos taurus GN=NPPA PE=1 SV=2	177.0	[0..1]	[150..1]
ANF_FELCA - Natriuretic peptides A OS=Felis catus GN=NPPA PE=3 SV=1	177.0	[0..1]	[150..1]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFTITVSF LLVLVFQFPG QTRANPVYGS VSNADLMDFK NLLDHLEDKM PLEDEAMPPQ  60
   61 VLSEQNEEVG APLSPLLEVP PWTGEVNPAQ RDGGALGRGP WDASDRSALL KSKLRALLAA 120
  121 PRSLRRSSCF GGRMDRIGAQ SGLGCNSFRY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.853872
Match:	PF00212.9
Description:	No description for PF00212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits