YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121051542, gi...
Organism:	Neisseria meningitidis Z2491
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121051542, gi....

Description	E-value	Query Range	Subject Range
gi\|240122704 - gi\|240122704\|ref\|ZP_04735660.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae PID332] gi\|240120402 - gi\|240120402\|ref\|ZP_04733364.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae PID24-1] gi\|240117066 - gi\|240117066\|ref\|ZP_04731128.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae PID1] gi\|240114863 - gi\|240114863\|ref\|ZP_04728925.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae PID18] gi\|254492926, gi... - gi\|254492926\|ref\|ZP_05106097.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae 1291], gi... gi\|240124894 - gi\|240124894\|ref\|ZP_04737780.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae SK-92-679... gi\|194097611, gi... - gi\|194097611\|ref\|YP_002000647.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae NCCP1194... gi\|239998147 - gi\|239998147\|ref\|ZP_04718071.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae 35/02] gi\|240112117 - gi\|240112117\|ref\|ZP_04726607.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae MS11] gi\|59800485, gi\|... - gi\|59800485\|ref\|YP_207197.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae FA 1090], gi... gi\|240079910 - gi\|240079910\|ref\|ZP_04724453.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae FA19] gi\|240015774 - gi\|240015774\|ref\|ZP_04722314.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae FA6140] gi\|240013329 - gi\|240013329\|ref\|ZP_04720242.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae DGI18]	119.0	[0..1]	[116..1]
gi\|62129435, gi\|... - gi\|62181802\|ref\|YP_218219.1\| protein-export membrane protein [Salmonella enterica subsp. enterica se...	117.0	[0..3]	[112..65]
gi\|110807041, gi... - gi\|110807041\|ref\|YP_690561.1\| protein export - membrane protein [Shigella flexneri 5 str. 8401], gi\|...	110.0	[0..3]	[112..25]
gi\|26110186, gi\|... - gi\|26249758\|ref\|NP_755798.1\| protein-export membrane protein [Escherichia coli CFT073], gi\|26110186\|... gi\|91212596, gi\|... - gi\|91212596\|ref\|YP_542582.1\| protein-export membrane protein SecG [Escherichia coli UTI89], gi\|91074...	110.0	[0..3]	[112..16]
gi\|238724378, gi... - gi\|77974016\|ref\|ZP_00829559.1\| COG1314: Preprotein translocase subunit SecG [Yersinia frederiksenii ...	108.0	[0..4]	[113..1]
gi\|21957402, gi\|... - gi\|22124599\|ref\|NP_668022.1\| preprotein translocase subunit SecG [Yersinia pestis KIM], gi\|21957402\|... gi\|25306330 - pir\|\|AD0425 protein-export membrane protein [imported] - Yersinia pestis (strain CO92) gi\|51594829, gi\|... - gi\|51594829\|ref\|YP_069020.1\| preprotein translocase subunit SecG [Yersinia pseudotuberculosis IP 329... gi\|166214015, gi... - gi\|166214015\|ref\|ZP_02240050.1\| preprotein translocase, SecG subunit [Yersinia pestis biovar Antiqua... gi\|45435295, gi\|... - gi\|45440438\|ref\|NP_991977.1\| preprotein translocase subunit SecG [Yersinia pestis biovar Microtus st... gi\|162351436, gi... - gi\|162418621\|ref\|YP_001608283.1\| preprotein translocase subunit SecG [Yersinia pestis Angola], gi\|16... gi\|167420700, gi... - gi\|167420700\|ref\|ZP_02312453.1\| preprotein translocase, SecG subunit [Yersinia pestis biovar Orienta... gi\|115349124, gi... - gi\|218930513\|ref\|YP_002348388.1\| preprotein translocase subunit SecG [Yersinia pestis CO92], gi\|1612... gi\|167401353, gi... - gi\|167401353\|ref\|ZP_02306853.1\| preprotein translocase, SecG subunit [Yersinia pestis biovar Antiqua... gi\|186893838, gi... - gi\|186893838\|ref\|YP_001870950.1\| preprotein translocase subunit SecG [Yersinia pseudotuberculosis PB... gi\|167057416, gi... - gi\|167423246\|ref\|ZP_02314999.1\| preprotein translocase, SecG subunit [Yersinia pestis biovar Mediaev... gi\|117675034, gi... - gi\|77631474\|ref\|ZP_00794060.1\| COG1314: Preprotein translocase subunit SecG [Yersinia pseudotubercul... Q66F63\|Q66F63_YERPS - Protein-export membrane protein segG precursor - Yersinia pseudotuberculosis gi\|89104069, gi\|... - gi\|89104069\|ref\|ZP_01176623.1\| COG1314: Preprotein translocase subunit SecG [Yersinia pestis biovar ... gi\|229839151, gi... - gi\|229839151\|ref\|ZP_04459310.1\| preprotein translocase membrane subunit [Yersinia pestis biovar Orie... gi\|108806047, gi... - gi\|108806047\|ref\|YP_649963.1\| preprotein translocase subunit SecG [Yersinia pestis Antiqua], gi\|1087... gi\|229700418, gi... - gi\|229896640\|ref\|ZP_04511807.1\| preprotein translocase membrane subunit [Yersinia pestis Pestoides A... gi\|108777051, gi... - gi\|229903877\|ref\|ZP_04518990.1\| preprotein translocase membrane subunit [Yersinia pestis Nepal516], ... gi\|149288913, gi... - gi\|153997276\|ref\|ZP_02022376.1\| protein-export membrane protein [Yersinia pestis CA88-4125], gi\|1492... gi\|229899715, gi... - gi\|229899715\|ref\|ZP_04514856.1\| preprotein translocase membrane subunit [Yersinia pestis biovar Orie... gi\|145212491, gi... - gi\|145600795\|ref\|YP_001164871.1\| preprotein translocase subunit SecG [Yersinia pestis Pestoides F], ...	107.0	[0..4]	[113..1]
lcl\|NC_016856.1_... - [gene=secG] [protein=preprotein translocase subunit SecG] [protein_id=YP_005239469.2] [location=comp... gi\|213645862 - gi\|213645862\|ref\|ZP_03375915.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213865086 - gi\|213865086\|ref\|ZP_03387205.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|214000931 - gi\|214000931\|ref\|ZP_03411666.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|238910086 - gi\|238910086\|ref\|ZP_04653923.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|25306332, gi\|... - gi\|25306332\|pir\|\|AD0902 protein-export membrane protein [imported] - Salmonella enterica subsp. ente... gi\|16762055 - gi\|16762055\|ref\|NP_457672.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|16421850, gi\|... - gi\|16766589\|ref\|NP_462204.1\| preprotein translocase subunit SecG [Salmonella typhimurium LT2], gi\|16... gi\|29139178, gi\|... - gi\|29143544\|ref\|NP_806886.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|205337750, gi... - gi\|205337750\|gb\|EDZ24514.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205348487, gi... - gi\|205348487\|gb\|EDZ35118.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|168463486, gi... - gi\|195633471\|gb\|EDX51885.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|168819641, gi... - gi\|205343277\|gb\|EDZ30041.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205323209, gi... - gi\|205323209\|gb\|EDZ11048.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205331185, gi... - gi\|205331185\|gb\|EDZ17949.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205333739, gi... - gi\|205333739\|gb\|EDZ20503.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|197289167, gi... - gi\|197289167\|gb\|EDY28536.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|213029357 - gi\|213029357\|ref\|ZP_03343804.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213052985 - gi\|213052985\|ref\|ZP_03345863.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213425429 - gi\|213425429\|ref\|ZP_03358179.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213622801 - gi\|213622801\|ref\|ZP_03375584.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|199605998, gi... - gi\|200388900\|ref\|ZP_03215512.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|204928325, gi... - gi\|204928325\|ref\|ZP_03219525.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|205354194, gi... - gi\|205354194\|ref\|YP_002227995.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|206710344, gi... - gi\|207858541\|ref\|YP_002245192.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|197213750, gi... - gi\|197250047\|ref\|YP_002148217.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|197240846, gi... - gi\|197262591\|ref\|ZP_03162665.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|197364152, gi... - gi\|197364152\|ref\|YP_002143789.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|198245348, gi... - gi\|198245348\|ref\|YP_002217264.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|194446778, gi... - gi\|194446778\|ref\|YP_002042549.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|56129479, gi\|... - gi\|56415222\|ref\|YP_152297.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|194448171, gi... - gi\|194448171\|ref\|YP_002047320.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|194458337, gi... - gi\|194471973\|ref\|ZP_03077957.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|194710167, gi... - gi\|194734665\|ref\|YP_002116240.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en...	107.0	[0..4]	[112..1]
gi\|85058352, gi\|... - gi\|85058352\|ref\|YP_454054.1\| preprotein translocase subunit SecG [Sodalis glossinidius str. 'morsita...	107.0	[0..4]	[113..1]
gi\|189367573, gi... - gi\|189367573\|gb\|EDU85989.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC45... gi\|189358577, gi... - gi\|189358577\|gb\|EDU76996.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC44... gi\|168773160, gi... - gi\|187770894\|gb\|EDU34738.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC41... gi\|168769591, gi... - gi\|189361469\|gb\|EDU79888.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC44... gi\|189373954, gi... - gi\|189373954\|gb\|EDU92370.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC86... SECG_ECOL6 - Protein-export membrane protein secG OS=Escherichia coli O6 GN=secG PE=3 SV=1 gi\|189001111, gi... - gi\|189001111\|gb\|EDU70097.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC40... gi\|170082710, gi... - gi\|170082710\|ref\|YP_001732030.1\| preprotein translocase membrane subunit [Escherichia coli str. K-12... gi\|189379688, gi... - gi\|189379688\|gb\|EDU98104.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC50... SECG_ECOL6 - Protein-export membrane protein SecG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... gi\|188016351, gi... - gi\|188016351\|gb\|EDU54473.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. EC41... gi\|162138366 - gi\|162138366\|ref\|YP_542582.2\| preprotein translocase subunit SecG [Escherichia coli UTI89] gi\|218555745, gi... - gi\|218555745\|ref\|YP_002388658.1\| preprotein translocase subunit SecG [Escherichia coli IAI1], gi\|218... gi\|218550458, gi... - gi\|218550458\|ref\|YP_002384249.1\| preprotein translocase subunit SecG [Escherichia fergusonii ATCC 35... gi\|74313712, gi\|... - gi\|74313712\|ref\|YP_312131.1\| preprotein translocase subunit SecG [Shigella sonnei Ss046], gi\|7385718... gi\|218691465, gi... - gi\|218691465\|ref\|YP_002399677.1\| preprotein translocase subunit SecG [Escherichia coli ED1a], gi\|218... gi\|89109938, gi\|... - gi\|89109938\|ref\|AP_003718.1\| preprotein translocase membrane subunit [Escherichia coli str. K-12 sub... gi\|218367014, gi... - gi\|218560245\|ref\|YP_002393158.1\| preprotein translocase subunit SecG [Escherichia coli S88], gi\|2183... gi\|218701944, gi... - gi\|218701944\|ref\|YP_002409573.1\| preprotein translocase subunit SecG [Escherichia coli IAI39], gi\|21... gi\|218353612, gi... - gi\|218696880\|ref\|YP_002404547.1\| preprotein translocase subunit SecG [Escherichia coli 55989], gi\|21... gi\|218706795, gi... - gi\|218706795\|ref\|YP_002414314.1\| preprotein translocase subunit SecG [Escherichia coli UMN026], gi\|2... SECG_ECOLI - Protein-export membrane protein secG (Preprotein translocase band 1 subunit) (P12) - Escherichia col... gi\|195938393 - gi\|195938393\|ref\|ZP_03083775.1\| preprotein translocase subunit SecG [Escherichia coli O157:H7 str. E... gi\|194433719, gi... - gi\|194433719\|ref\|ZP_03065994.1\| preprotein translocase, SecG subunit [Shigella dysenteriae 1012], gi... gi\|208814133, gi... - gi\|208814133\|ref\|ZP_03255462.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. ... gi\|208726408, gi... - gi\|208806607\|ref\|ZP_03248944.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. ... gi\|190907529, gi... - gi\|75240802\|ref\|ZP_00724700.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli F11], ... gi\|209162168, gi... - gi\|209400768\|ref\|YP_002272645.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str.... gi\|75260103, gi\|... - gi\|75260103\|ref\|ZP_00731381.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli E22], ... gi\|208818987, gi... - gi\|208818987\|ref\|ZP_03259307.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. ... gi\|187733049, gi... - gi\|75176224\|ref\|ZP_00696376.1\| COG1314: Preprotein translocase subunit SecG [Shigella boydii BS512],... gi\|217326643, gi... - gi\|217326643\|ref\|ZP_03442726.1\| preprotein translocase, SecG subunit [Escherichia coli O157:H7 str. ... gi\|75208499, gi\|... - gi\|75208499\|ref\|ZP_00708819.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli B171],... gi\|215488491, gi... - gi\|215488491\|ref\|YP_002330922.1\| preprotein translocase subunit SecG [Escherichia coli O127:H6 str. ... gi\|115514593, gi... - gi\|117625469\|ref\|YP_858792.1\| preprotein translocase subunit SecG [Escherichia coli APEC O1], gi\|115... EG12095 - preprotein translocase membrane subunit / SecYEG inner membrane translocon secA-interacting subunit;... gi\|227835292, gi... - gi\|227887896\|ref\|ZP_04005701.1\| Sec family type II general secretory pathway preprotein translocase ... gi\|15833308, gi\|... - gi\|15833308\|ref\|NP_312081.1\| preprotein translocase subunit SecG [Escherichia coli O157:H7 str. Saka... gi\|238902277, gi... - gi\|238902277\|ref\|YP_002928073.1\| preprotein translocase membrane subunit [Escherichia coli BW2952], ... gi\|110643415, gi... - gi\|110643415\|ref\|YP_671145.1\| preprotein translocase subunit SecG [Escherichia coli 536], gi\|1103450... gi\|254795124, gi... - gi\|254795124\|ref\|YP_003079961.1\| preprotein translocase membrane subunit [Escherichia coli O157:H7 s... SECG_ECO57 - Protein-export membrane protein SecG OS=Escherichia coli O157:H7 GN=secG PE=3 SV=1 EG12095 - preprotein translocase membrane subunit / SecYEG inner membrane translocon secA-interacting subunit;...	107.0	[0..4]	[112..1]
gi\|30142057 - gi\|30142057\|gb\|AAO17817.1\| SecG [Citrobacter rodentium]	107.0	[0..4]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAFKTLIWI VNIISALAVI VLVLLQHGKG ADAGATFGSG SGSAQGVFGS AGNANFLSRS  60
   61 TAVAATFFFA TCMAMVYIHT HTTKHGLDFS NVQQTQQAPK PVSNTEPSAP VPQQQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.39794
Match:	2akhX
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits