YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUS5_BOVIN
Organism:	Bos taurus
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUS5_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|73976897 - gi\|73976897\|ref\|XP_532550.2\| PREDICTED: similar to NADH-ubiquinone oxidoreductase 15 kDa subunit (Co...	168.0	[0..1]	[105..125]
NDUS5_PANTR - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Pan troglodytes GN=NDUFS5 PE=3 SV=3 NDUFS5 - NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)	164.0	[0..1]	[105..1]
gi\|109090224 - gi\|109090224\|ref\|XP_001106653.1\| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (N...	164.0	[0..1]	[105..1]
NDUS5_MACFA - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Macaca fascicularis GN=NDUFS5 PE=3 SV=3	164.0	[0..1]	[105..1]
NDUS5_GORGO - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Gorilla gorilla gorilla GN=NDUFS5 PE=3 SV=3 gi\|111661859 - gi\|111661859\|gb\|ABH12170.1\| mitochondrial complex I subunit NDUFS5 [Gorilla gorilla]	163.0	[0..1]	[105..1]
gi\|207080042 - gi\|207080042\|ref\|NP_001128791.1\| DKFZP468J0613 protein [Pongo abelii] gi\|55728334 - gi\|55728334\|emb\|CAH90911.1\| hypothetical protein [Pongo abelii]	161.0	[0..1]	[105..1]
gi\|66472480, gi\|... - gi\|94734570\|emb\|CAK11316.1\| NADH dehydrogenase (ubiquinone) Fe-S protein 5 [Danio rerio], gi\|6647248...	156.0	[0..1]	[106..1]
gi\|114668408 - gi\|114668408\|ref\|XP_511369.2\| PREDICTED: hypothetical protein [Pan troglodytes]	156.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFFDVQKRL GVDLDRWMTI QSAEQPHKIP SRCHAFEKEW IECAHGIGSI RAEKECKIEF  60
   61 EDFRECLLRQ KTMKRLHAIR RQREKLIKEG KYTPPPHHSG QEEPRS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits