YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUB3_BOVIN
Organism:	Bos taurus
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB3_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|76682820 - gi\|76682820\|ref\|XP_869180.1\| PREDICTED: similar to NADH dehydrogenase [Bos taurus]	155.0	[0..1]	[98..1]
NDUB3_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pongo pygmaeus GN=NDUFB3 PE=3 SV=3 NDUB3_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pongo abelii GN=NDUFB3 PE=3 SV=3	148.0	[0..6]	[98..2]
gi\|57110931 - gi\|57110931\|ref\|XP_536029.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	147.0	[0..1]	[98..1]
NDUFB3 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa gi\|123981056, gi... - gi\|123995861\|gb\|ABM85532.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa [synthetic c... NDUB3_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Gorilla gorilla gorilla GN=NDUFB3 PE=... NDUB3_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pan troglodytes GN=NDUFB3 PE=3 SV=3 gi\|111662139 - gi\|111662139\|gb\|ABH12212.1\| mitochondrial complex I subunit NDUFB3 [Gorilla gorilla]	147.0	[0..13]	[98..13]
gi\|134254255, gi... - gi\|89269513\|emb\|CAJ83361.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 [Xenopus tropicalis...	146.0	[0..1]	[98..1]
NDUB3_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Mus musculus GN=Ndufb3 PE=1 SV=1	146.0	[0..13]	[98..19]
gi\|109100553, gi... - gi\|109102863\|ref\|XP_001113376.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	145.0	[0..13]	[98..13]
gi\|114653097 - gi\|114653097\|ref\|XP_001147321.1\| PREDICTED: similar to NADH dehydrogenase [Pan troglodytes]	143.0	[0..6]	[98..2]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHGHGHEHG PSKMELPDYK QWKIEGTPLE TVQEKLAARG LRDPWGRNEA WRYMGGFANN  60
   61 VSFVGALLKG FKWGFAAFVV AIGAEYYLES QKKDKKHH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.283997
Match:	PF08122.3
Description:	No description for PF08122.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.613	N/A	N/A	a.39.1	EF-hand
View	Download	0.613	N/A	N/A	a.39.1	EF-hand
View	Download	0.558	N/A	N/A	a.156.1	S13-like H2TH domain
View	Download	0.548	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.445	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.424	N/A	N/A	d.15.2	CAD & PB1 domains
View	Download	0.406	N/A	N/A	d.15.1	Ubiquitin-like
View	Download	0.361	N/A	N/A	d.2.1	Lysozyme-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits