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View Structure Prediction Details

Protein: CCB13_ARATH
Organism: Arabidopsis thaliana
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCB13_ARATH.

Description E-value Query
Range
Subject
Range
gi|12322897 - gi|12322897|gb|AAG51435.1|AC008153_8 putative cyclin; 69674-68010 [Arabidopsis thaliana]
371.0 [0..1] [414..1]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGPVVHPQ PVRGDPIDLK NAAAKNRRAL GDIGNVDSLI GVEGGKLNRP ITRNFRAQLL  60
   61 ENAQVAAAAN KKAPILDGVT KKQEVVRAVQ KKARGDKREP SKPIEVIVIS PDTNEVAKAK 120
  121 ENKKKVTYSS VLDARSKAAS KTLDIDYVDK END

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [154-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAAVEYVEDM YIFYKEVVNE SKPQMYMHTQ PEIDEKMRSI LIDWLVEVHV KFDLSPETLY  60
   61 LTVNIIDRFL SLKTVPRREL QLVGVSALLI ASKYEEIWPP QVNDLVYVTD NSYNSRQILV 120
  121 MEKTILGNLE WYLTVPTQYV FLVRFIKASG SDQKLENLVH FLAELGLMHH DSLMFCPSML 180
  181 AASAVYTARC CLNKTPTWTD TLKFHTGYSE SQLMDCSKLL AFIHSKAGES KLRGVLKKYS 240
  241 KLGRGAVALI SPAKSLMSSA P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.39794
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle