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View Structure Prediction Details

Protein: TLP3_ARATH
Organism: Arabidopsis thaliana
Length: 406 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLP3_ARATH.

Description E-value Query
Range
Subject
Range
gi|20197552, gi|... - gi|3738302|gb|AAC63644.1| putative tubby protein [Arabidopsis thaliana], pir||H84920 probable Tub fa...
669.0 [0..1] [406..1]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL  60
   61 RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV PELSSKLTFP ISLKQP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.76
Match: 2e31A
Description: No description for 2e31A was found.

Predicted Domain #2
Region A:
Residues: [117-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPRGSLVQCY IMRNRSNQTY YLYLGLNQAA SNDDGKFLLA AKRFRRPTCT DYIISLNCDD  60
   61 VSRGSNTYIG KLRSNFLGTK FTVYDAQPTN PGTQVTRTRS SRLLSLKQVS PRIPSGNYPV 120
  121 AHISYELNVL GSRGPRRMQC VMDAIPASAV EPGGTAPTQT ELVHSNLDSF PSFSFFRSKS 180
  181 IRAESLPSGP SSAAQKEGLL VLKNKAPRWH EQLQCWCLNF NGRVTVASVK NFQLVAAPEN 240
  241 GPAGPEHENV ILQFGKVGKD VFTMDYQYPI SAFQAFTICL SSFDTKIACE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 103.0
Match: 1c8zA
Description: Transcriptional factor tubby, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle