YRC Public Data Repository - Protein Structure Prediction

Protein:	ITPK4_ARATH
Organism:	Arabidopsis thaliana
Length:	488 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ITPK4_ARATH.

Description	E-value	Query Range	Subject Range
ITPK6_ORYSJ - Inositol-tetrakisphosphate 1-kinase 6 OS=Oryza sativa subsp. japonica GN=ITPK6 PE=2 SV=1	337.0	[0..4]	[488..53]
gi\|3212855, gi\|7... - pir\|\|T00678 hypothetical protein At2g43980 [imported] - Arabidopsis thaliana, gi\|3212855\|gb\|AAC23406...	309.0	[0..1]	[400..1]
gi\|77382845, gi\|... - gi\|77458842\|ref\|YP_348348.1\| hypothetical protein Pfl01_2617 [Pseudomonas fluorescens Pf0-1], gi\|773...	239.0	[0..18]	[487..63]
gi\|70730466, gi\|... - gi\|70730466\|ref\|YP_260207.1\| ribosomal protein S6 modification protein-related protein [Pseudomonas ...	237.0	[0..16]	[487..65]
gi\|95108962, gi\|... - gi\|95108962\|emb\|CAK13658.1\| putative ribosomal protein S6 modification protein-related protein [Pseu... gi\|95108962 - gi\|95108962\|emb\|CAK13658.1\| putative ribosomal protein S6 modification protein-related protein [Pseu...	217.0	[0..15]	[487..64]
gi\|27365136, gi\|... - gi\|27365136\|ref\|NP_760664.1\| glutathione synthase [Vibrio vulnificus CMCP6], gi\|27361282\|gb\|AAO10191...	216.0	[0..25]	[487..41]
RIMK1_HAHCH - Probable alpha-L-glutamate ligase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=rimK1 PE=3 SV=1	215.0	[0..156]	[487..2]
gi\|90578054, gi\|... - gi\|90578054\|ref\|ZP_01233865.1\| ribosomal protein S6 modification protein [Vibrio angustum S14], gi\|9...	214.0	[0..156]	[483..2]
gi\|125619293, gi... - gi\|75830046\|ref\|ZP_00759332.1\| COG0189: Glutathione synthase/Ribosomal protein S6 modification enzym... RIMK_VIBC3 - Probable alpha-L-glutamate ligase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogaw... RIMK_VIBCH - Probable alpha-L-glutamate ligase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N... RIMK_VIBCH - Ribosomal protein S6 modification protein OS=Vibrio cholerae GN=rimK PE=3 SV=1 gi\|254286047, gi... - gi\|254286047\|ref\|ZP_04961008.1\| ribosomal protein S6 modification protein [Vibrio cholerae AM-19226]... gi\|153828207, gi... - gi\|153828207\|ref\|ZP_01980874.1\| ribosomal protein S6 modification protein [Vibrio cholerae 623-39], ... gi\|149739375, gi... - gi\|153826788\|ref\|ZP_01979455.1\| ribosomal protein S6 modification protein [Vibrio cholerae MZO-2], g... RIMK_VIBCM - Probable alpha-L-glutamate ligase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rimK PE=3 SV=1 gi\|229355150, gi... - gi\|229507645\|ref\|ZP_04397150.1\| ribosomal protein S6 glutaminyl transferase [Vibrio cholerae BX 3302... gi\|121586179, gi... - gi\|121586179\|ref\|ZP_01675970.1\| ribosomal protein S6 modification protein [Vibrio cholerae 2740-80],... gi\|229519295, gi... - gi\|229519295\|ref\|ZP_04408738.1\| ribosomal protein S6 glutaminyl transferase [Vibrio cholerae RC9], g... gi\|124114424, gi... - gi\|153216166\|ref\|ZP_01950305.1\| ribosomal protein S6 modification protein [Vibrio cholerae 1587], gi... gi\|229524284, gi... - gi\|229524284\|ref\|ZP_04413689.1\| ribosomal protein S6 glutaminyl transferase [Vibrio cholerae bv. alb... gi\|124119708, gi... - gi\|153221361\|ref\|ZP_01952339.1\| ribosomal protein S6 modification protein [Vibrio cholerae MAK 757],... gi\|229528717, gi... - gi\|229528717\|ref\|ZP_04418107.1\| ribosomal protein S6 modification protein [Vibrio cholerae 12129(1)]... gi\|153801041, gi... - gi\|153801041\|ref\|ZP_01955627.1\| ribosomal protein S6 modification protein [Vibrio cholerae MZO-3], g... gi\|229607149, gi... - gi\|229607149\|ref\|YP_002877797.1\| ribosomal protein S6 glutaminyl transferase [Vibrio cholerae MJ-123... gi\|125620705, gi... - gi\|75818907\|ref\|ZP_00749020.1\| COG0189: Glutathione synthase/Ribosomal protein S6 modification enzym... gi\|153819515, gi... - gi\|153819515\|ref\|ZP_01972182.1\| ribosomal protein S6 modification protein [Vibrio cholerae NCTC 8457... gi\|75815783, gi\|... - gi\|75815783\|ref\|ZP_00746276.1\| COG0189: Glutathione synthase/Ribosomal protein S6 modification enzym... gi\|229512160, gi... - gi\|229512160\|ref\|ZP_04401639.1\| ribosomal protein S6 glutaminyl transferase [Vibrio cholerae B33], g...	213.0	[0..156]	[487..2]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGVLLDESV LFSPESEDSS PSLRESVPSL LRLLRYSMIR TGISYGLDLP ENKVDLLRKT  60
   61 AAEYSINCLP LETSLTSVTF GDTLKAWYSD GSILYVASSR KEEILRELSP SQLVVLLDVE 120
  121 GDSLEDPNII HIHSLEELPM TICCINKKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [150-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDGAAIVAY IMKPSRVEDF AKRGALPMYP TSCGLIFLPL MFEFPLASQL KHADIIFHKA  60
   61 TDEILSIELN CSDSKSSVAV TFSTGMEKLK KYMEDQNACA IVDPIRNIYP VVDRLKMQHI 120
  121 LLGLEGLGAA GRKIRGACFL KIDSYDEPDL AQNLSRAGLS LPCIVKPQVA CGVADAHSMA 180
  181 IVFRVEDFKN LNTPVPAIIQ EYVDHSSRIF KFYVLGETIF HAVKKSIPSS SSLRKSAEEN 240
  241 GLKPILFDSL KSLPVDSANQ NPVSEIDLEL VTEAATWLRK KLDLTIFGFD VVIQEGTGDH 300
  301 VIVDLNYLPS FKEVPDNIAV PAFWEAIRNR FDQHVQEKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2odtX
Description:	No description for 2odtX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits