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View Structure Prediction Details

Protein: RBL18_ARATH
Organism: Arabidopsis thaliana
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBL18_ARATH.

Description E-value Query
Range
Subject
Range
RBL20_ARATH - Rhomboid-like protein 20 OS=Arabidopsis thaliana GN=RBL20 PE=2 SV=1
162.0 [0..1] [287..1]

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Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGPSGFNN APVTKAFVIA TALFTVFFGI RGGSSKLGLS YQDIFEKFRI WKLIISAFAF  60
   61 SSTTQLLSGL YLLYFFRVFE RQIGSNKYSV FIFFSGFVSL ILETILLSLT KDPTANLLTS 120
  121 GPYALVFASF VPFFLDIPVT KRFGVLGVHF SDKSFIYLAG VQLLLSSWKR SIFTGICGII 180
  181 AGSLYRLNIF GIRKAKFPEF MASLFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2nr9A
Description: No description for 2nr9A was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.015349122465922 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [207-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFSLPSLSSH SQPPRRTSPN LGRQAVRAYR APMPSTTEPS EEAIATLVSM GFDQNAARQA  60
   61 LVHARNDVNA ATNILLEAHS H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 1oqyA
Description: Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle