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View Structure Prediction Details

Protein: gi|30685673
Organism: Arabidopsis thaliana
Length: 365 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30685673.

Description E-value Query
Range
Subject
Range
gi|74195800 - gi|74195800|dbj|BAE30463.1| unnamed protein product [Mus musculus]
445.0 [0..1] [301..84]

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Predicted Domain #1
Region A:
Residues: [1-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYLERASPT LKETLLKIYR AEKPIEVDQH FHEFGSIEYH IKYSVSDPNI VHVSTSTLLE  60
   61 TQGAVTLKEI SSYTYEVIKN IGVGVIDIVD PPRLGFQLTL GLNLDNIPRG KEAIKIITRI 120
  121 SELQAIILSS QLKEMLRSLN FQDDSRSINN MPIRIVYHPS EPFYVFKQPE KITAVFPMNF 180
  181 KDNSDVVIAT SFFQDMGKAP QCSWSPIPPL QLRGEPVQDL TTNSGFVSFD ITSRHIEGKR 240
  241 LDKTVWNLLN FYACAKYHIK CSRGYIQRRM RKRMETLVKL LNNTSLEEEA AQNENGRCKY 300
  301 VKEFVKVPKG KLMMKQRCKE MTRRVKISKF RIKINGCARF RFNQRWISLP KFSSKPSDKS 360
  361 YTKLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 122.0
Match: 1k8kD
Description: ARPC2 (34 kDa subunit)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
actin binding 6.0922573068519 bayes_pls_golite062009
actin filament binding 5.01990273175321 bayes_pls_golite062009
cytoskeletal protein binding 4.64781612293343 bayes_pls_golite062009
binding 2.16088008530271 bayes_pls_golite062009
protein binding 1.98253629760139 bayes_pls_golite062009
structural molecule activity 1.40122171600941 bayes_pls_golite062009
structural constituent of cytoskeleton 1.37010524302636 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle