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View Structure Prediction Details

Protein: gi|23506089, gi|...
Organism: Arabidopsis thaliana
Length: 504 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23506089, gi|....

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
206.0 [0..42] [501..1920]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG  60
   61 KMEYKTRRNE PTIKGTILFD ENSTISISPV N

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.23
Match: 1x05A
Description: Solution structure of the C-terminal PH domain of human pleckstrin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [92-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQGLPKYNGC CIYIGTPQKK DYFLCAETPG AAKAWVTTLH ATQLVLKAHK EAVESLSGSG  60
   61 SATLGTVATV VAAANSTALE CSREIQAAMQ ISLRNALKIT PNKPIDGPLD DLTIMKETLR 120
  121 VKDEELHNLA RELRSRDSMI KEIADKLSET AEAAVAAASA AHTMDEQRKI VCVEFERLTT 180
  181 DSQRQQEATK LKLKELEEKT FTLSKEKDQL VKERDAALQE AHMWRSELGK ARERVVILEG 240
  241 AVVRAEEKVR VAEASGEAKS KEASQREATA WTEKQELLAY VNMLQTQLQR QQLETKQVCE 300
  301 EKTESTNGEA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [402-504]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLPMTKETEK NVDKACLSIS RTASIPGENV VHMSEEQVVN AQPPVGENEW NDIQATEARV  60
   61 SDVREISAET ERDRRNSLDI PVVSPEPNVP RNDPPSESFH HQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 2dfsA
Description: No description for 2dfsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle