| Protein: | VAL1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 790 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAL1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
742.0 | [0..6] | [790..1] |
|
|
558.0 | [0..9] | [754..15] |
|
|
513.0 | [0..6] | [738..1] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS 60
61 GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH QLNLNTRGEN PGVFSRLPMK 120
121 TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG 180
181 EMHESSP
|
| Detection Method: |  |
| Confidence: | 1.26 |
| Match: | 2dfyX |
| Description: | No description for 2dfyX was found. |
|
Region A: Residues: [188-283] |
1 11 21 31 41 51
| | | | | |
1 LQPSLNMGLA VNPFSPSFAT EAVEGMKHIS PSQSNMVHCS ASNILQKPSR PAISTPPVAS 60
61 KSAQARIGRP PVEGRGRGHL LPRYWPKYTD KEVQQI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.322 | a.8.11 | Description not found. |
| View | Download | 0.249 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.249 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | a.60.14 | Description not found. |
| View | Download | 0.217 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.217 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.216 | a.39.1 | EF-hand |
| View | Download | 0.203 | a.7.7 | BAG domain |
|
Region A: Residues: [284-413] |
1 11 21 31 41 51
| | | | | |
1 SGNLNLNIVP LFEKTLSASD AGRIGRLVLP KACAEAYFPP ISQSEGIPLK IQDVRGREWT 60
61 FQFRYWPNNN SRMYVLEGVT PCIQSMMLQA GDTVTFSRVD PGGKLIMGSR KAANAGDMQG 120
121 CGLTNGTSTE
|
| Detection Method: | |
| Confidence: | 33.30103 |
| Match: | 1widA |
| Description: | Solution Structure of the B3 DNA-Binding Domain of RAV1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [414-502] |
1 11 21 31 41 51
| | | | | |
1 DTSSSGVTEN PPSINGSSCI SLIPKELNGM PENLNSETNG GRIGDDPTRV KEKKRTRTIG 60
61 AKNKRLLLHS EESMELRLTW EEAQDLLRP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.255 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.250 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.244 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.236 | b.1.1 | Immunoglobulin |
| View | Download | 0.235 | c.51.3 | B12-dependend dehydatases associated subunit |
| View | Download | 0.235 | c.51.3 | B12-dependend dehydatases associated subunit |
| View | Download | 0.229 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.224 | c.47.1 | Thioredoxin-like |
|
Region A: Residues: [503-619] |
1 11 21 31 41 51
| | | | | |
1 SPSVKPTIVV IEEQEIEEYD EPPVFGKRTI VTTKPSGEQE RWATCDDCSK WRRLPVDALL 60
61 SFKWTCIDNV WDVSRCSCSA PEESLKELEN VLKVGREHKK RRTGESQAAK SQQEPCG
|
| Detection Method: | |
| Confidence: | 2.83 |
| Match: | 2e61A |
| Description: | No description for 2e61A was found. |
|
Region A: Residues: [620-790] |
1 11 21 31 41 51
| | | | | |
1 LDALASAAVL GDTIGEPEVA TTTRHPRHRA GCSCIVCIQP PSGKGRHKPT CGCTVCSTVK 60
61 RRFKTLMMRR KKKQLERDVT AAEDKKKKDM ELAESDKSKE EKEVNTARID LNSDPYNKED 120
121 VEAVAVEKEE SRKRAIGQCS GVVAQDASDV LGVTELEGEG KNVREEPRVS S
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
