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View Structure Prediction Details

Protein: BASS2_ARATH
Organism: Arabidopsis thaliana
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BASS2_ARATH.

Description E-value Query
Range
Subject
Range
gi|20269901 - gi|20269901|gb|AAM18095.1|AF498303_1 putative sodium-dependent bile acid symporter [Arabidopsis thal...
267.0 [0..1] [409..1]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASISRILPT DGRLSQCRIN TSWVPSTTRT QTHLDFPKLV SVSNSGISLR IQNSKPISPV  60
   61 FALEATSSRR VVCKAAAGVS GDLPESTPKE LSQYEKIIEL LTTLFPLWVI LGTL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGIFKPSLVT WLETDLFTLG LGFLMLSMGL TLTFEDFRRC LRNPWTVGVG FLAQYMIKPI  60
   61 LGFLIAMTLK LSAPLATGLI LVSCCPGGQA SNVATYISKG NVALSVLMTT CSTIGAIIMT 120
  121 PLLTKLLAGQ LVPVDAAGLA LSTFQVVLVP TIIGVLANEF FPKFTSKIIT VTPLIGVILT 180
  181 TLLCASPIGQ VADVLKTQGA QLILPVA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 73.568636
Match: PF01758.7
Description: No description for PF01758.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [322-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLHAAAFAIG YWISKFSFGE STSRTISIEC GMQSSALGFL LAQKHFTNPL VAVPSAVSVV  60
   61 CMALGGSGLA VFWRNLPIPA DDKDDFKE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle