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View Structure Prediction Details

Protein: gi|15227888, gi|...
Organism: Arabidopsis thaliana
Length: 396 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15227888, gi|....

Description E-value Query
Range
Subject
Range
gi|21593294 - gi|21593294|gb|AAM65243.1| putative carboxyl-terminal peptidase [Arabidopsis thaliana]
572.0 [0..4] [395..15]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIARFVLSI LIVAAIVSGS EFSDTRDAKV EKILKKLNKP ALKSIKSPDG DIIDCVHMNN  60
   61 HPIYDHPLFK NYTIQMKPSS YPKGKNNESS DKEKQSVVTQ LWTVNGKCPK NSIPIRRTRR 120
  121 KEILRTEYMQ RYDKKNPNII 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.295 N/A N/A d.15.11 Doublecortin (DC)

Predicted Domain #2
Region A:
Residues: [141-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHPKASTSNS IHEYAQIQAK GKFHGAHADI NVWKPFVQTP KEFSLAQMWV MAGPFSEVNS  60
   61 VEAGWQVYQD RYGDDNPRYF IFWTADGYHS GCYNLDCQGF VPVSQKFALG AAVSNVSTFD 120
  121 GQQYHISTTI WKDPNSGNWW LKFGDEFVGY WPSILFNHLK DGATEIQWGG EIINFKDGAL 180
  181 HTTTRMGSGH FAESGYQKAS YFKDVEIIDE RDIHSSPKEG YSYMTQESCY NIRSGYAKVW 240
  241 GVYFYYGGPG RNLNCK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 97.886057
Match: PF03080.6
Description: No description for PF03080.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle