YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUA6_BOVIN
Organism:	Bos taurus
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUA6_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|47217026 - gi\|47217026\|emb\|CAG01654.1\| unnamed protein product [Tetraodon nigroviridis]	188.0	[0..1]	[128..1]
gi\|56202717, gi\|... - gi\|56202717\|emb\|CAI19953.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa [Homo sapie... gi\|109451994, gi... - gi\|109451994\|emb\|CAK54859.1\| NDUFA6 [synthetic construct], gi\|109451398\|emb\|CAK54560.1\| NDUFA6 [synt... ENSPTRT00000026990 - null	186.0	[0..1]	[128..27]
gi\|109094394 - gi\|109094394\|ref\|XP_001106675.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subco...	183.0	[0..1]	[128..27]
gi\|149065780, gi... - gi\|27663138\|ref\|XP_235518.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	183.0	[0..2]	[128..4]
gi\|27503953, gi\|... - gi\|41055750\|ref\|NP_957262.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 [Danio rerio], gi...	182.0	[0..1]	[128..1]
NDUA6_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pongo abelii GN=NDUFA6 PE=2 SV=3 NDUA6_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pongo pygmaeus GN=NDUFA6 PE=2 SV=3	182.0	[0..1]	[128..1]
gi\|60833616 - gi\|60833616\|gb\|AAX37056.1\| NADH dehydrogenase 1 alpha subcomplex 6 [synthetic construct]	181.0	[0..1]	[128..1]
NDUA6_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pan troglodytes GN=NDUFA6 PE=2 SV=3 NDUFA6 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa gi\|111662330 - gi\|111662330\|gb\|ABH12239.1\| mitochondrial complex I subunit NDUFA6 [Gorilla gorilla] gi\|123989728, gi... - gi\|60655749\|gb\|AAX32438.1\| NADH dehydrogenase 1 alpha subcomplex 6 [synthetic construct], gi\|1239992... HGNC:7690\|MIM:60... - dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa NDUA6_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla GN=NDUFA6 PE...	180.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASGLRQAA VAASTSVKPI FSRDMNEAKR RVRELYRAWY REVPNTVHLF QLDISVKQGR  60
   61 DKVREMFKKN AHITDPRVVD LLVIKGKMEL EETIKVWKQR THVMRFFHET EAPRPKDFLS 120
  121 KFYVGHDP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.619789
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	5.93173238853379	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	2.03251759613897	bayes_pls_golite062009
catalytic activity	1.27869887805121	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.11438086483982	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.991145680503877	bayes_pls_golite062009
binding	0.733528208596867	bayes_pls_golite062009
protein binding	0.067386060157074	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: