YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114579090, gi...
Organism:	Pan troglodytes
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114579090, gi....

Description	E-value	Query Range	Subject Range
gi\|37955217 - gi\|37955217\|gb\|AAP20057.1\| HSD23 [Homo sapiens]	0.0	[1..259]	[1..259]
gi\|109103934 - gi\|109103934\|ref\|XP_001103333.1\| PREDICTED: similar to unc-50 homolog [Macaca mulatta]	0.0	[1..259]	[1..259]
gi\|73970082 - gi\|73970082\|ref\|XP_854439.1\| PREDICTED: similar to unc-50 homolog [Canis familiaris]	0.0	[1..259]	[1..259]
UNC50_BOVIN - Protein unc-50 homolog OS=Bos taurus GN=UNC50 PE=2 SV=1	0.0	[1..259]	[1..259]
UNC50_MOUSE - Protein unc-50 homolog OS=Mus musculus GN=Unc50 PE=2 SV=1	0.0	[1..259]	[1..259]
UNC50_RAT - Protein unc-50 homolog OS=Rattus norvegicus GN=Unc50 PE=1 SV=1	0.0	[1..259]	[1..259]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSTSVNSL VQGNGVLNSR DAARHTAGAK RYKYLRRLFR FRQMDFEFAA WQMLYLFTSP  60
   61 QRVYRNFHYR KQTKDQWARD DPAFLVLLSI WLCVSTIGFG FVLDMGFFET IKLLLWVVLI 120
  121 DCVGVGLLIA TLMWFISNKY LVKRQSRDYD VEWGYAFDVH LNAFYPLLVI LHFIQLFFIN 180
  181 HVILTDTFIG YLVGNTLWLV AVGYYIYVTF LGYSALPFLK NTVILLYPFA PLILLYGLSL 240
  241 ALGWNFTHTL CSFYKYRVK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits