YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24111460, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24111460, gi|....

Description	E-value	Query Range	Subject Range
gi\|32189733, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|15... gi\|21629327, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|21...	205.0	[0..2]	[186..142]
gi\|95928934, gi\|... - gi\|95928934\|ref\|ZP_01311679.1\| GPR1/FUN34/yaaH [Desulfuromonas acetoxidans DSM 684], gi\|95134835\|gb\|...	189.0	[0..5]	[185..88]
gi\|49643212 - gi\|49643212\|emb\|CAG99164.1\| KLLA0E02927p [Kluyveromyces lactis] gi\|50308153, gi\|... - gi\|50308153\|ref\|XP_454077.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643212\|emb\|CAG9916...	183.0	[0..6]	[182..136]
gi\|28564914 - gi\|28564914\|gb\|AAO32541.1\| FUN34 [Saccharomyces castellii]	182.0	[0..2]	[181..95]
GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPR1 PE=1 SV=3 GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica GN=GPR1 PE=1 SV=3	182.0	[0..2]	[185..73]
gi\|14970589 - gi\|14970589\|emb\|CAA52243.2\| glyxoxylate pathway regulator [Yarrowia lipolytica]	182.0	[0..2]	[185..73]
orf19.8810 - FRP3 CGDID:CAL0002835 Assembly 19, Contig19-20103 (7379, 8230) CDS, translated using codon table 12 ... gi\|46431483, gi\|... - gi\|68491816\|ref\|XP_710303.1\| possible transmembrane sensor/transporter [Candida albicans SC5314], gi...	180.0	[0..2]	[187..80]
gi\|207341596 - gi\|207341596\|gb\|EDZ69605.1\| YNR002Cp-like protein [Saccharomyces cerevisiae AWRI1631] ATO2 - Putative transmembrane protein involved in export of ammonia, a starvation signal that promotes cell... gi\|190408996 - gi\|190408996\|gb\|EDV12261.1\| transmembrane protein [Saccharomyces cerevisiae RM11-1a] ATO2_YEAST - Ammonia transport outward protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATO2... gi\|151944531 - gi\|151944531\|gb\|EDN62809.1\| ammonia (ammonium) transport outward [Saccharomyces cerevisiae YJM789]	180.0	[0..2]	[182..82]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTKLANPA PLGLMGFGMT TILLNLHNVG YFALDGIILA MGIFYGGIAQ IFAGLLEYKK  60
   61 GNTFGLTAFT SYGSFWLTLV AILLMPKLGL TDAPNAQFLG VYLGLWGVFT LFMFFGTLKG 120
  121 ARVLQFVFFS LTVLFALLAI GNIAGNAAII HFAGWIGLIC GASAIYLAMG EVLNEQFGRT 180
  181 VLPIGESH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	129.022276
Match:	PF01184.10
Description:	No description for PF01184.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits