YRC Public Data Repository - Protein Structure Prediction

Protein:	LERL1_PONPY
Organism:	Pongo pygmaeus
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LERL1_PONPY.

Description	E-value	Query Range	Subject Range
gi\|114619773 - gi\|114619773\|ref\|XP_528101.2\| PREDICTED: similar to Leptin receptor overlapping transcript-like 1 [P...	186.0	[0..1]	[131..64]
gi\|74197155 - gi\|74197155\|dbj\|BAE35124.1\| unnamed protein product [Mus musculus]	175.0	[0..1]	[131..1]
gi\|66911159, gi\|... - gi\|66911159\|gb\|AAH97642.1\| MGC53950 protein [Xenopus laevis], gi\|27696439\|gb\|AAH43984.1\| MGC53950 pr...	174.0	[0..1]	[131..1]
gi\|60832046, gi\|... - gi\|60832046\|gb\|AAX36995.1\| leptin receptor overlapping transcript-like 1 [synthetic construct], gi\|6...	174.0	[0..1]	[131..1]
gi\|57097807 - gi\|57097807\|ref\|XP_532817.1\| PREDICTED: similar to leptin receptor overlapping transcript-like 1 (pr...	172.0	[0..1]	[131..1]
gi\|7662510, gi\|4... - gi\|7662510\|ref\|NP_056159.1\| leptin receptor overlapping transcript-like 1 [Homo sapiens], gi\|4071361...	172.0	[0..1]	[131..1]
LERL1_RAT - Leptin receptor overlapping transcript-like 1 OS=Rattus norvegicus GN=Leprotl1 PE=1 SV=1	172.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIKALISL SFGGAIGLMF LMLGCALPIY NKYWPLFVLF FYILSPIPYC IARRLVDDTD  60
   61 AMSNACKELA IFLTTGIVVS AFGLPIVFAR AHLIEWGACA LVLTGNTVIF ATILGFFLVF 120
  121 GSNDDFSWQQ W

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.070581
Match:	PF04133.5
Description:	No description for PF04133.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits