YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54643848, gi\|...
Organism:	Drosophila pseudoobscura
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54643848, gi|....

Description	E-value	Query Range	Subject Range
gi\|73958783 - gi\|73958783\|ref\|XP_862159.1\| PREDICTED: similar to ARL-6 interacting protein-1 (Aip-1) isoform 8 [Ca...	201.0	[0..1]	[130..167]
gi\|76640848 - gi\|76640848\|ref\|XP_873532.1\| PREDICTED: similar to ribosomal protein S15a [Bos taurus]	195.0	[0..1]	[130..118]
gi\|50755847 - gi\|50755847\|ref\|XP_425249.1\| PREDICTED: similar to Rps15a protein [Gallus gallus]	193.0	[0..1]	[130..94]
gi\|30109302 - gi\|30109302\|gb\|AAH51205.1\| Rps15a protein [Mus musculus]	193.0	[0..1]	[130..9]
gi\|114594801 - gi\|114594801\|ref\|XP_523306.2\| PREDICTED: similar to Rps15a protein [Pan troglodytes]	192.0	[0..1]	[130..1]
ENSPTRT00000014415 - null gi\|90074910 - gi\|90074910\|dbj\|BAE87135.1\| unnamed protein product [Macaca fascicularis] ENSCJAT000000436... - null, null RS15A_RAT - 40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2 RPS15A - ribosomal protein S15a tr\|G3IKE2\|G3IKE2... - 40S ribosomal protein S15a OS=Cricetulus griseus GN=I79_024343 PE=3 SV=1 gi\|73958787, gi\|... - gi\|73958789\|ref\|XP_862234.1\| PREDICTED: similar to ribosomal protein S15a isoform 10 [Canis familiar... tr\|F7BLU1\|F7BLU1... - Ribosomal protein S15a OS=Equus caballus OX=9796 GN=RPS15A PE=3 SV=1 RS15A_MOUSE - 40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=1 SV=2 CCDS10571.1_1 - null RS15A_BOVIN - 40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1 ENSMMUG000000055... - null, null, null, null ENSOCUP000000159... - pep:novel chromosome:oryCun2:6:9242441:9246952:1 gene:ENSOCUG00000000179 transcript:ENSOCUT000000001...	190.0	[0..1]	[130..1]
gi\|47086525, gi\|... - gi\|78174360\|gb\|AAI07524.1\| Ribosomal protein S15a [Danio rerio], gi\|47086525\|ref\|NP_997927.1\| riboso...	189.0	[0..1]	[130..1]
gi\|76780132, gi\|... - gi\|76780132\|gb\|AAI06350.1\| MGC130892 protein [Xenopus laevis], gi\|67677960\|gb\|AAH97585.1\| MGC114789 ... gi\|542157969\|ref... - PREDICTED: 40S ribosomal protein S15a [Zonotrichia albicollis] gi\|18000277 - gi\|18000277\|gb\|AAL54900.1\|AF159546_1 ribosomal protein S15 isoform [Lapemis hardwickii] gi\|118098060, gi... - gi\|118098060\|ref\|XP_425249.2\| PREDICTED: similar to ribosomal protein S15 isoform 2 [Gallus gallus],... gi\|156717896, gi... - gi\|156717896\|ref\|NP_001096489.1\| hypothetical protein LOC100125111 [Xenopus (Silurana) tropicalis], ...	189.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRMNVLADA LKCINNAEKR GKRQVLLRPC SKVIIKFLTV MMKHGYIGEF EIVDDHRSGK  60
   61 IVVNLTGRLN KCGVISPRFD VPINDIEKWT NNLLPSRQFG YVVLTTSGGI MDHEEARRKH 120
  121 LGGKILGFFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1s1hH
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits